Gossypium arboreum (tree cotton): 108456857
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Entry
108456857 CDS
T05776
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108456857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108456857
03036 Chromosome and associated proteins [BR:
gab03036
]
108456857
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108456857
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108456857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
PilN
Motif
Other DBs
NCBI-GeneID:
108456857
NCBI-ProteinID:
XP_017611063
LinkDB
All DBs
Position
11:complement(1628042..1635303)
Genome browser
AA seq
1130 aa
AA seq
DB search
MFGSSSPFGQSSSSPFAAQSVFGQTNNANSNPFAPKPSFGSITPFGSQTGGSIFGGTSTG
VFGSAQSSSPFSSTTAFGASSSPAFGSSMPAFGSSSTPAFGSSSSSFGGSSVFGQKPAFG
FGSTTTQSSPYGSTTQQSQPAFGSGIFGSSAPFGSSTPAFGATSTPAFGATSTPAFGATS
APAFGATSAPAFGGTSTPAFGSMSTPAFGATSTPAFGSTGSPAFGSTGTAFGVSNAPVFG
TGGTFGASSTPAFGTSSTPAFGGSSTPAFGASSSPSFSFGSAFGQSTPAFGSFGASSTPA
FGSTSTPAFGSTSTPAFGATSTPAFGSTGSPAFGSSGTAFGMSNASVFGTGGTFGASSTP
AFGTSSTPAFGTSSSPAFGASSTPSFSFGSSPTFGQSTPAFGSSPFGTTAFGAQSSPFGS
QSSTPAFGTTSFGQSPFGGQRGGSRIAPYSSTTEADGGSGTQPAGKLGSISAMPVYKDKS
HEELRWEDYQLGDKGGPNPAAQPSAGIGFGVSTTPSNPFGTSSTFGQTSANPFSSTSSNP
FSLKPPSFNSTGFTTSATTSNPFQSTSSSLFGQTSSMTTSIFSSSSTPTFGTGSSLFSSS
VTPSFSTSSSIFGTGAAPATTPTFATGLNFSSSQTSPLFSSTPAIGQTGSAFGQVTSTFG
QNTSNFGQTSIFNTPPTGFGGNMFSSSLSFAPSSSPAAFGSTTPPFSSPFQPAQTSGAFS
FSNFGQSQPGGGSSIFGQSNIGLSYVSTTQSAAVAHPSTITNPYGTLPAMPQISIGRTGA
APSVQYGISSMPVVDKPAPVRILPLLTSRYLSQRRIRLPTRKYHPNNDSPKIPFFSDNEE
TPCVPKADAVFIPRENPRSLVIRPTKSWPSRASAEKASPLKDASTPPHENGKFSNDGSNA
EDKDENPAENGLVKERIHIIRSNQKVNGVHDDYSTEKEDSYMTISGHRAGEAAIVYEHGA
DIEALMPKLRRSDYFTEPRIQELAAKERAEPGYCRRVKDFVVGRHGYGSIKFLGETDVRR
LDLESLVQFNNREVIVYLDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTRQQYTEGPRVEK
YKNMLKRKAEEQGAEFLSYDPIKGEWRFKVNHFSTYKLEDGDDDGEDKEH
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtttggttcatctagcccttttgggcaatcatcaagtagcccatttgctgcccaatct
gtttttggccagaccaacaatgcaaatagcaatccatttgctccaaaaccttcctttggt
agcattaccccttttggatcccaaacaggtggttcaatatttgggggtacttctactgga
gtgtttggctcagcccaatcttcttctcccttttcctcaacaactgcctttggtgcttca
tcgtctccagcttttggaagttccatgcctgcttttggatcttcttctactcctgcattt
ggcagttcatcatcatcttttggtgggtcttctgttttcggtcagaagcctgcatttggc
tttgggtctactactactcaatcaagtccttatggaagcacaacgcaacaatcacaacct
gcatttggtagtggtatatttggttcctctgcaccttttggttccagtactcctgccttc
ggtgccacgagcacccctgcttttggtgccacaagtacccctgcctttggtgccacgagt
gcccctgcttttggtgccacaagtgcccctgcttttggtggcacaagtacccctgccttt
ggttccatgagtactccagcctttggtgccacaagcacccctgcctttggttcaactgga
agtccagcatttgggagcactggaactgcatttggtgtgtccaatgccccagtctttgga
acaggtggcacatttggagcatcaagcacacctgcttttggcacttccagcactcctgca
tttgggggttcgagcactcctgcttttggagcatcttcaagtccatcattcagctttggg
tcagcatttgggcagtcaacacccgcatttggtagctttggtgcctcaagcactcctgcc
tttggttccacaagcactcctgcctttggttccacaagcacccctgcctttggtgctacc
agcactccggcctttggttcaactggaagtccagcattcgggagcagtggaactgcattt
ggcatgtctaatgcctcagtctttggcacaggaggcacatttggagcatcaagcacacct
gcttttggcacatcaagcacacctgcttttggcacttcaagcagtcctgcttttggagca
tcttctactccttccttcagctttgggtctagcccaacttttggccagtctacaccagca
ttcggtagtagtccatttggaaccactgcatttggagcccagagttctccttttggaagt
caatcttctacaccagcatttggaaccactagctttggccagtcaccttttgggggtcaa
cgtgggggaagtagaatagctccgtactcttctactactgaagcagatggagggagtggt
acacagccagctggaaaattggggtcaatatcagcaatgcctgtttacaaagataaaagt
cacgaggagttgagatgggaggattatcagttaggagataaaggtggaccgaatccagct
gctcagccttctgcagggattggctttggtgtgtcaactacaccttcaaatcctttcggc
acctcttcaacatttggtcagacatctgcaaatcctttttccagcacaagttccaatccg
tttagtctaaaacctccatcctttaatagtacaggttttacaacctcagcaactacatca
aatccttttcaatcgacatcatcaagcctttttgggcaaacttcatcaatgacaacttca
atatttagttcatcttccactcctacatttggaactgggtcttctctttttagttcatct
gtcactccttccttttcaacttcgtcatccatttttggcactggtgcagcaccggcaaca
acgcctacatttgctactggtttaaattttagcagcagtcagacatcccccctgttcagt
tctacccctgcaattgggcagacaggcagtgcttttgggcaggtgacctctacatttgga
cagaatactagtaattttggtcaaacaagcattttcaacacacctcccactgggtttggt
gggaatatgttttcaagctcactatctttcgctccttctagcagcccagctgccttcggc
tcaacaactccccctttttcttctccttttcagccagctcagactagtggtgctttcagt
ttcagcaattttggtcagtcacaaccaggtggtggttcaagcatttttggtcagagtaac
attggcttgtcgtatgtgtcaactacacagagtgctgctgtagcacatccctcgactatt
acaaacccctatggaacactccctgctatgcctcaaatctcaattggtcggactggggct
gccccatctgttcaatatggaatttctagcatgcctgttgtggacaaacctgctcctgtt
agaatattgcccttattgacttctcgatatctgtctcaaaggcggattaggttgcctaca
aggaaatatcatcctaataatgatagtccgaagattccatttttcagtgataatgaagag
acaccctgcgtgcctaaggccgatgctgtttttattcctagggaaaacccaaggtctctg
gtcattcgtccgacaaaaagttggccttccagagcttctgcagagaaggcatcaccattg
aaggatgcatccactccgccgcatgagaatggcaaattttctaatgatggctccaacgct
gaggataaagacgaaaatcctgctgaaaatggccttgtgaaggagcgaattcatatcatc
agaagtaaccaaaaggttaatggagtccatgatgattattctactgagaaagaggactcg
tacatgacgatcagtggtcacagagctggtgaagcagctattgtctatgagcatggggct
gacatcgaggctctaatgccaaagctccgccgttctgactactttacagaacctcgaatc
caagaactagcagcaaaggaaagggctgaaccagggtactgtcgccgtgtaaaggatttt
gtggttgggcggcatggttatggaagcatcaaattcttgggtgagaccgatgtgagacgt
cttgatctggagtcccttgtccaattcaacaaccgtgaggtgattgtttacttggatgac
agcaagaaacctcctgtcggacaaggtcttaataaacctgctgaggtaacacttctcaac
attaaatgcttcgataaaaagaccaggcagcagtatacagaagggccacgagttgagaaa
tacaagaacatgcttaagaggaaggcagaggagcaaggagctgagtttctctcctatgat
cccatcaaaggtgaatggaggttcaaggtcaatcacttcagcacatacaagttggaagat
ggagacgacgatggtgaagataaagagcactag
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