Gossypium arboreum (tree cotton): 108456989
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Entry
108456989 CDS
T05776
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108456989
03015 mRNA surveillance pathway
108456989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108456989
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108456989
5.6.2.5 RNA 5'-3' helicase
108456989
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108456989
mRNA cycle factors
Common to processing body (P body) and stress granule
108456989
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NAT10_TcmA_helicase
nSTAND3
ATPase
PhoH
UvrD-helicase
NPHP3_N
AAA_22
SRP54
Ribosomal_S13_N
AAA_16
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
108456989
NCBI-ProteinID:
XP_017611266
LinkDB
All DBs
Position
9:complement(84346096..84356939)
Genome browser
AA seq
1258 aa
AA seq
DB search
MESHFETASQPDPATDAYTFLEFNTQLESDFGYTDFRDPICSWPTPYDATAADRSGSDTA
ASSSPSSASKGAARGVNSNNNSSICSRTVVDALATGISGLNFEETAGDEDGGYEYGKGDS
VEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPL
GETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNAFKDMNWDLSQWCPLIDDR
CFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDTSLEDLEKPGIDDEPQPVALKY
EDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKQVAYFVFPKEDNELRL
VPGDELRLRYSGDAARLAWQAVGHVIKLTAQEEVALELRASQGVPIDVSHGFSVDFVWKS
TSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVRMVRNTLPRRFGAPGLPELNASQAF
AVKSVLQKPISLIQGPPGTGKTVTSAAIVYNMANQGQGQVLVCAPSNVAVDQLAEKISAT
GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSSSDEKKY
KALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVK
QVVLVGDHCQLGPVIMCKKGARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNS
FYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEK
IVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMLRTGALRQQLYKEIEVASVDSFQGREKD
YIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH
ECLVEGPLNNLKQSMVQFQKPKKVYNNRRVLFARGPGIVPNDNFASAASSSPNADRRNSR
AQGAYMPPGLPNGTHKPGVQPTRFEMPQVPLPPFPGPPSQPYAIPTHEAVLGPVGAVPQV
PQPGNRGFGAGCGNAGAPISSRLQHQQGTPQNAGTLGSAFNFPPLENPNGQPSMGGQLSQ
PGFVNNMTVQGPNQSLHDGFSSGVMSQDYSGDDFKTQGSHVPYNVADFSTQVSQGGYAAD
YSTQGAQSGFLGNFLNQNSQAGYSRVGTGNDFMSQEYMNRGSRGLFTQVGFSDPSQDDAS
QSHCGVNPNQLQSQGFMNSLYSQPLAQFNKQPLNLQASQQGHGSQTRNFNLMVKNKDA
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggaatctcatttcgagacggcctcgcaacccgatccagccacagatgcttacacattc
ctcgaattcaacacccaactcgagtccgatttcggctacacggactttcgagacccgatt
tgttcttggccgacaccctacgatgccaccgccgctgatcgctccggctccgacactgct
gcctcctcctctccctctagtgcttcaaaaggcgctgcccgtggcgtaaatagtaataac
aacagcagtatttgtagtaggaccgtggttgatgcgttagctacggggattagtggattg
aatttcgaggagacagctggggatgaggatggtggttatgagtacggaaaaggggattcg
gtcgagcactcttgtcggtattgtggggtttcaaacccggcttgcgtggttcgctgtaat
gtcccttcgtgtaggaagtggttctgtaattcgagagggaatacatctggctcgcatatt
gttaatcatctcgtacgagctaaacacaaggaagtctgccttcataaggatagtcctttg
ggagaaacaattcttgaatgctacaactgtggatgcagaaatgttttccttcttggtttt
atatctgctaagacagagagcgttgttgttcttctttgtagagaaccttgtttgaatgtt
aatgcttttaaggacatgaattgggacttgagtcagtggtgtccccttattgatgataga
tgctttttgcagtggttagttaaggtcccatctgaacaagaacagctaagggcacggcaa
ataagtgctcagcagataaacaaggtagaagagctttggaagacaaatcctgatacttcc
cttgaagatcttgagaagcctggcatagatgatgaacctcagcccgtggccttgaagtat
gaagatgcttatcagtatcaaaatgtttttgcgccacttattaagcttgaagctgactat
gataaaatgatgaaagaatctcaaagcaaggacaatgtcaccgttcgatgggatattggc
ttaaacaagaaacaagttgcatattttgtttttccaaaggaagacaatgagctgcgtcta
gtacctggtgatgagttgcgactgcgttattcaggagatgctgcccgcctagcatggcag
gctgttgggcatgtgatcaagctaacggcacaagaggaagttgcacttgagctccgtgct
agtcagggagttcctattgatgtcagccatggattcagtgttgattttgtctggaagagt
acaagctttgaccggatgcagggggcaatgaaaacatttgcagttgatgaaacaagtgtt
agtggttatatttaccaccaccttcttggccatgaggttgaggttcgaatggttcgtaat
acactgcctcgacgttttggtgcacccggtctgccagaactgaatgcatctcaagctttt
gctgtaaagagtgttcttcagaagccaataagcctgattcaagggccccctggcactgga
aaaactgttacttctgctgccattgtttataacatggctaatcagggtcagggacaggtt
ctagtctgtgctccaagtaatgtggctgttgaccagctagctgaaaagataagtgccact
ggtttaaaggttgtaaggctttgtgcgaaatcaagggaagctgtgagttctcctgttgaa
catttgaccctgcattatcaggttcgacatcttgacacatctgagaaaagtgaacttcac
aagttacaactattgaaagatgaacaaggtgaattgtcaagtagtgatgagaaaaagtac
aaagcactaaagcgagcaacagagagagaaatatcccaaagcgctgatgtcatttgttgc
acttgtgttggggctggagatcctagattagcaaattttaggttccgccaggtacttatt
gatgagtctactcaggcaactgaacctgagtgtctcattcctttagttcttggagtgaag
caggttgttcttgttggtgatcattgccaacttggtcctgttatcatgtgcaagaaagga
gctcgtgctgggctagcacaatctctatttgaacgtctagttttacttggtgttaaacca
attagattacaggtccaataccgtatgcacccatgtttatcagagtttccttctaatagc
ttctatgaaggcacattacaaaatggagtgacaatcaatgaaaggcaatcatcgggcatt
gattttccttggcctgtgcctaatcgtcccatgtttttttatgtacagatgggacaagag
gagattagtgctagtggtacatcatatctcaatcgaactgaggctgcaaatgttgaaaag
attgttaccacattcttgaggagtggtgttgttcctagtcagattggggtcataacaccg
tatgagggacaaagggcatatattgtaaattatatgttaagaactggtgctttgagacag
cagctttacaaagaaattgaggttgcaagtgttgattcgttccaaggacgggaaaaagat
tacatcatcttgtcttgtgtgagaagtaatgaacatcagggtattggatttctaaatgat
ccccgcaggcttaatgttgccttaacacgtgctcgatatggtattgtaattcttggaaac
cccaaagttcttagcaaacaacctctgtggaatggtttattgacacattacaaggaacat
gagtgcctcgttgaaggacccctaaataacttgaagcagagtatggttcaattccaaaag
cccaaaaaggtgtacaacaatcgaagagttctctttgcccgtggacctgggattgtgcct
aatgataattttgcatctgctgcctcatccagtccaaatgcggatagaagaaatagtcgt
gctcagggtgcgtatatgcctcccggtcttcctaatggtactcacaagcctggggttcaa
cctaccaggttcgaaatgccccaggttcctcttccaccatttcctggtcctccttcccaa
ccttatgctattccaactcatgaagctgtacttggacctgtgggagctgttcctcaggtc
ccacaacctggaaaccgaggctttggagctggatgtggtaatgctggtgctccaatcagc
agtcgtctccagcaccagcaaggcacaccacagaatgctggaactcttggatctgctttt
aacttccctcctctggaaaatccaaacggccagccatctatgggtggtcaattatctcaa
cctggatttgtgaataatatgacagtccaagggccaaaccaatcattacatgatggattt
tcaagcggggtaatgtcccaggactactcgggtgatgacttcaaaacccaaggctcacat
gttccttataacgttgctgatttttctacacaggtttcacagggtgggtatgctgctgat
tattccacacaaggagcacagagtggttttctagggaacttcctaaaccagaattctcaa
gctggatattctcgtgttggcactggaaatgatttcatgtctcaggaatacatgaatcgt
ggatcacgagggctgtttactcaggttggctttagtgacccttcacaggatgatgcatca
cagagccattgtggtgtgaatcccaaccagcttcagtctcagggttttatgaattctctc
tactcccagcccttagctcagttcaacaaacagccactaaacttgcaggcttctcagcag
ggacatggctcccaaaccagaaacttcaatttaatggttaagaataaggatgcatag
DBGET
integrated database retrieval system
