Gossypium arboreum (tree cotton): 108457009
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Entry
108457009 CDS
T05776
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04120
Ubiquitin mediated proteolysis
gab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108457009
04120 Ubiquitin mediated proteolysis
108457009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108457009
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108457009
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
U-box type E3
108457009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
108457009
NCBI-ProteinID:
XP_017611290
UniProt:
A0A0B0MMV7
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Position
9:complement(2417439..2424004)
Genome browser
AA seq
1046 aa
AA seq
DB search
MATQKPQRTPEEIEDIILRKIFLVTLKENPSSSSSDSRVVYLEMTAAEILSEGKSLLLSR
DLMERVLIDRLSGEFPNSEPPFNYLIGCYKRAHEEIKKISNMKDKTLRSEMESAAKQAKK
LAVSYARIHLGNPDLFSNGNLKDSNPKAGSSLSSSSPLLPLVFAEVSSGLMLDGFGGNDL
GSGVDCPPGFLDDFFKDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALLYLVKF
PVGAKSLVNHPWWIPKGVYLNGRVIEMTSILGPFFHVSALPDHTIFKSQPDVGQQCFSDA
STRRAADLLSSFTTIKTLMNTLYDGLAEVLLCLLRNFETRDSVLEYLAEVINKNASRAHI
QVDPISCASSGMFVNLSAVMLQRSEPFLDTNLTKRDKIDPTYVFYCNRLDLRGLTALHAT
SEEVAEWIDKDNPVKTDGSGLNNDGENSLRQLQVASSSGSTPNVKPTRSSSGKANYHFIC
ECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKAMQGQAPSPQLELDISRLEKE
IELYSQEKFCYEAQILRDGALIRQALSFYRLMVVWLVDLVGGFKMPLPPTCPMEFASMPE
HFVEDAMELLIFASRIPKALDGVVLDDFMNFIIMFMASPQFIKNPYLRAKMVEVLNCWMP
RRSGSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW
QVPSHRNAWKQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWE
RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVANMLN
YFLLQLVGPQRKSLTLKEPEKYEFRPKELLKQIVRIYVHLARGDAKNIFPSAISSDGRSY
NEQLFSAAADVLRRIGEDGRVIQDFIELGAKAKAAASEAMDTEAALGDIPDEFLDPIQYT
LMKDPVILPSSRITIDRPVIQRHLLSDSTDPFNRSHLTSEMLIPNTELKARIEEFIRSQE
LKKHEGLNMQSSKGTIQPTSGEMLID
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcaaaaaccccaaagaaccccagaagaaatagaagatataatcctaaggaag
atcttccttgtaacccttaaagagaacccatcatcttcttcttctgattcaagggttgtt
tacctagagatgaccgcagctgagatcttaagtgaaggcaaaagtcttttactttcacgt
gatctaatggaaagggttttaattgatcgtctgtctggtgaattccctaattcagaaccc
ccttttaattatctcattggttgttacaagcgagctcatgaagaaatcaagaagatttcc
aacatgaaagacaagacgctgcgttctgagatggaatctgctgctaaacaggctaagaag
ttggctgtttcatatgctaggattcatctgggaaatcctgatttgttttctaatgggaat
ttaaaagatagtaaccccaaagccggttcttctttgtcttccagttcccctttgcttccc
ttagtttttgctgaagtttcaagtggactaatgcttgatgggtttggagggaatgattta
ggaagtggggtggattgtccacctgggtttttggacgacttctttaaggattcagatttt
gatactttggatcctatcttaaaaggtttgtatgaggatttaagagggagtgttttgaaa
gtttcagctttgggaaattttcagcaacctttgagggctttgttgtatttggttaagttc
cctgttggtgctaagagcttggttaatcatccatggtggattcctaaaggagtttacttg
aatggacgtgtcatcgaaatgactagcattttgggcccctttttccatgttagtgctctg
cctgatcataccattttcaagagccagcctgatgttggccagcagtgcttctcagatgca
tcaactagacgagcagctgatttgttatcttcattcaccacaataaagactctcatgaat
actttatatgatggtctggctgaagttcttctttgtctccttagaaacttcgagactcgt
gacagtgttctcgagtatcttgcagaagtcatcaataaaaatgcatcaagggcccatata
caggtggatcctatatcttgtgcaagttccggcatgtttgtcaatctcagtgctgttatg
ctccaacgttcagagccatttttggatacaaatttaacaaaaagagataaaatcgatcca
acctatgtcttctactgtaaccgtttggatttgagggggttaactgctctgcacgcaaca
tcagaagaagtggctgaatggatcgataaggataatcctgtgaaaactgatgggagtgga
ctaaataatgatggtgaaaatagtttgaggcaattgcaagtagcatctagttccggaagt
accccaaatgtgaagccaacccgaagtagtagtggaaaagctaattatcatttcatttgt
gaatgcttctttatgactgctagggtactcaacttgggcctcctaaaggcattttcggac
tttaagcatctagtccaggacatttcaagaagtgaagacacacttgccaccttaaaagct
atgcaaggacaggcaccttctccacaactggagcttgatatatcgaggcttgagaaggaa
attgaattgtattcacaggaaaaattctgttacgaggctcaaattttgagggatggggca
cttattcgacaagcactttcgttctatcgactaatggtggtttggttagttgacttggtt
ggtggatttaaaatgcctctgccacctacatgtccgatggaatttgcttcaatgccagag
cactttgtggaagatgctatggaactattaatatttgcttctcggattccgaaagctctt
gatggagttgtacttgatgattttatgaattttattattatgtttatggcaagtccacaa
tttatcaagaacccctatctcagagcaaaaatggttgaagttttgaactgttggatgccg
cgtagaagtggttcatctgcgacatcgacactatttgaagggcatcaattgtctttggaa
tatctcgtgcggaatcttttgaagctatatgttgacattgaattcactggttctcacaca
cagttctatgataagttcaacatccgccataatattgctgaacttcttgaatatctttgg
caagttcctagtcaccgtaatgcttggaaacagattgcgaaggaagaagaaaagggtgtt
tatctgaatttcttgaatttccttattaacgatagcatctacctcctcgatgaaagtctt
aacaaaattcttgaactcaaagagcttgaggctgagatgtcaaatactgcagaatgggaa
cgcaggcctgctcaggagaggcaagagagaactcgactgttccactcccaggagaatatt
atacggattgacatgaagttggcaaatgaggatgttagtatgctggcttttacatctgag
cagattacagctccttttctactccctgagatggttgagagagtggcgaatatgttaaat
tactttttattgcaattagttggccctcaaagaaagtcgctcactctgaaagagcccgaa
aagtatgaatttcgcccgaaagagttgctcaagcagattgtccgcatatacgttcatctg
gcaaggggtgatgccaaaaacatctttccatctgccatctccagtgatggtcgatcctat
aatgaacagttgtttagtgctgcagctgatgttcttcgaagaattggtgaggatgggagg
gtaatacaagattttattgagcttggtgcaaaggccaaggctgcggcttcagaggccatg
gacactgaagctgcccttggagatattcctgatgaattccttgatccaattcaatataca
ttgatgaaggatccggtgatcttaccatcttcaagaatcacaatagacaggcctgttatc
caaagacatcttctaagtgatagtactgatccattcaaccgatctcatcttacctcggag
atgttgattccgaacaccgaactgaaggcaagaattgaagagtttattaggtcccaggag
ctgaagaagcatgaaggcttgaacatgcaaagctctaaaggaacaatacaaccaacaagt
ggagaaatgttaattgattag
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