Gossypium arboreum (tree cotton): 108457020
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Entry
108457020 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108457020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108457020
03012 Translation factors [BR:
gab03012
]
108457020
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108457020
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108457020
Translation factors [BR:
gab03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108457020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
AAA_30
PhoH
AAA_16
AAA_11
Motif
Other DBs
NCBI-GeneID:
108457020
NCBI-ProteinID:
XP_017611304
LinkDB
All DBs
Position
11:complement(514551..523688)
Genome browser
AA seq
1266 aa
AA seq
DB search
MPQIDTREQPAAAEYSSFTWPHKQFHRLISSKQTQNPLFTKTLTSIFKCNQNPTEKGLNT
RTIRQKMSCYSAIFQGYLRTTAMSLRPASLQLNNSPKILLKPCSFSFVPRTQSPGSFRRL
HLRNGLVRCSKSGTAASSSRTIALDWRNVALPYSELQSSSYGRYAYQDVSGDDSDHEFGS
PQSQSQMGASTLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQLSVLATRMGLNSR
QYAKVVVFSKLPLPNYRSDLDDKRPQREVVLPFGLQRDVDLHLKAYLSHKAMSSGSFLDK
PLIRSSSGGIPAADEVPVNPEPFAQNSVALERILRRRSLQIRDKQQEWQESPEGQKMLEF
RRSLPAYKERDALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQ
PRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRDLR
GVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYYGGAPTIHI
PGFTYPVRAHFLENILEMTGYRLTPYNQIDDYGQEKMWKMQKQAQSFKKRKSQLTSAVED
VLEDADFRGYSLRTRESLSCWNPDSIGFNLIEHVLCHIVRKERRGAVLVFMTGWDDINSL
KDKLQAHPFLGDPSKVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLATNMAETSITINDV
VFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCVYDTF
ADYQLPELLRTPLQSLCLQIKSLELGGITEFLSRALQPPELLSVQNAVEYLKIIGALDEN
ENLTVLGRNLSMLPVEPKLGKMLILGAILNCLDPIMTVVAGLSVRDPFLMPFDKKDLAET
AKAQFAGQEYSDHIAVIRAYEGWKEAEREQSGYEYCWKNFLSAQTLKAIHSLRKQFFYLL
KDAGLVDQNVENCNKWSHDEHLVRAVICAGLFPGICSVVNKEKSIALKTMEDGQVLLHSN
SVNAEVPKVPYPWLVFNEKVKVNAVFLRDSTGVSDSILLLFGGNISRGGLDGHLKMLGGY
LEFFMKPALAVMYLSVKRELEELVQRKLLDPTLDMHSSNELLSAVRLLVSEDRCEGRFVF
GRQVTLSSKKTATIKTPGKSEADNSKNHLQTVLARAGHGPPTYKTKQLKNNQFRSTVIFN
GLDFVGQSCSSKKLAEKDAAAQALLWLRGEDHSTSRDIDHASLLLKKSKSRRKTSVSDAK
WSTKWS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaatagacacacgggaacagccagcagccgcagaatacagttcctttacatgg
ccacataaacaatttcataggctcatctcttcaaagcaaacccaaaaccccctcttcaca
aaaaccctaacgagcatcttcaaatgtaatcaaaaccccactgaaaaaggattaaatacc
agaacaatccgccaaaaaatgtcatgttactcggctatatttcagggttatctcaggaca
accgccatgtctctgcgacctgcttccctccaacttaacaactcccctaaaatcctttta
aaaccttgttcattttcctttgtccccaggacccaatcccctggttctttccggcgtttg
catttgaggaatggcctcgttaggtgctcaaagtctgggactgctgcttcttcttccagg
actattgccttggattggaggaacgttgccttgccttattcggagctgcaaagctctagt
tatggccgttatgcttaccaggatgtttccggcgatgattcggaccatgaatttgggtct
ccacagtctcagagtcaaatgggtgcttcaacgcttgataatattgatgaatggagatgg
aaattgactatgcttcttcgcaacaaagatgagcaagaggtagtatctagggagaggaag
gataggcgtgactttgagcaactttcagttctggcaacgagaatgggtttaaatagtcgt
caatatgcaaaggtggttgtttttagtaaacttccattgccaaattatagatctgatctt
gatgataagcgtccacaaagagaggtggtcttaccttttggcttgcaaagagatgtagac
cttcacctcaaagcttacctttctcataaggctatgagcagtggtagctttttggataag
cccttgattagatcaagtagtggtggaatacctgctgcagatgaagtacctgttaatcca
gagccctttgcacagaatagtgttgccttggagagaattcttcgacggagaagtttgcaa
atacgtgataagcaacaagaatggcaggagtctcctgaaggccaaaagatgcttgaattt
cgtagaagcttgcctgcatataaagagagagatgcattgctaaatgctatctcacagaat
caggtggttgttgtctctggcgaaactggttgtggtaaaaccacacaacttcctcagtac
atattagagtctgagattgaagctgctcgtggagcttcctgtagtattatatgtactcag
cctagaagaatatctgctatggctgtttctgaaagagttgctgctgaaagaggggagaaa
ttgggagaatctgtcggctataaagtacgccttgagggaatgaaagggagagacactcgc
ctccttttttgtacaactggcattttacttaggcgactacttgttgacagagatttgaga
ggtgtaagtcatgttattgttgatgagattcatgaacgaggaatgaatgaagattttctt
cttattgtgttgaaagatctccttccacgtcggccagagttgaggttgattttgatgagt
gcaaccttaaatgccgaactcttttcttcttactatggtggtgccccaacaatccatatc
cctggttttacatatcctgtacgagcacattttctggagaatattctagagatgactgga
tacaggttaactccatataatcaaattgatgattatggtcaagaaaagatgtggaaaatg
cagaagcaggcccaatcttttaaaaagaggaagagtcagctaacttctgctgttgaggat
gtacttgaagatgctgatttcaggggatatagtttacgcacacgagaatctttgtcctgt
tggaatcctgattcaattggcttcaatctcattgagcatgttctttgccacatagtgagg
aaagagaggcgtggtgctgttttggttttcatgactggttgggatgacataaattctcta
aaagataagctccaggctcatcctttcctaggtgacccgagcaaggtgttgttgcttgca
tgccatggttccatgcctagctctgagcagaggttaatatttgaaaagccagaagatgga
gtgaggaaaatagttctagctactaatatggctgagactagcatcaccatcaatgatgtg
gtttttgtggttgattgtggaaaggcaaaagaaacatcctatgatgcattaaataatact
ccttgtttgcttccatcttggatatcaaaggctgctgcccggcaaagaaggggaagagct
ggtcgtgttcaacctggcgagtgttaccatctttatcccaaatgtgtttacgatactttt
gctgattatcaacttccagagcttttaaggacaccattgcagtctttatgtttgcaaatc
aaaagtctagagcttggaggtatcaccgagttcctttctagggcattgcagcctccagaa
cttctgtcggtacaaaatgctgttgaatatctgaagattattggagctttagatgaaaac
gagaatttgacagtgctaggacgcaacttgtcaatgcttcctgttgagcctaaactcgga
aaaatgctgatactgggagctattttgaactgtttggatccaataatgactgttgttgct
gggctcagtgtccgtgatccattcctgatgccatttgataagaaggatcttgctgaaacg
gcaaaagcccaattcgctggccaggaatacagtgatcatattgcagttatccgagcctat
gagggttggaaagaagctgaaagggagcagtctggttatgagtattgttggaagaatttt
ctttctgcacaaactctcaaggctattcactctctacgaaagcagttcttctatttgctc
aaggatgccggtctagttgatcaaaatgtagaaaactgcaataagtggagccacgatgaa
catcttgtcagggcagttatttgtgctggcttgtttccagggatatgctctgttgtgaac
aaagagaagtcaattgcactgaaaacaatggaggatggtcaagttcttttacactcgaat
tcggtgaatgctgaagttcccaaagttccatacccttggctggttttcaatgaaaaggta
aaagtgaatgcagtattcctccgcgattcaactggtgtttctgattccatactgctgtta
tttggagggaacatctctagaggtggactagatggacatctgaagatgttgggaggatat
ttggagttcttcatgaaacctgctttagctgttatgtatttaagcgtgaaaagagagcta
gaagaactagttcagaggaaacttttggatcctacattagacatgcattctagcaatgag
ctcctctcggcagtaagattgctggtctcagaagatcgatgtgaaggtagatttgtcttt
ggccgtcaggtgacgttgtcttcaaagaaaacagctactattaaaacaccaggtaaaagc
gaggctgataattcgaagaatcatctgcaaacagtccttgccagggctggacatggacca
cccacttacaagacaaagcaactaaagaacaaccagttccgatctacagtcatctttaat
gggctggattttgttgggcagtcttgtagcagcaagaaacttgcagagaaggatgcagct
gctcaggctttgctgtggttgaggggtgaagaccattcaacttcccgagatattgaccat
gcctcattgcttcttaaaaagagcaaaagccggaggaaaacttcagtcagtgatgctaag
tggagtactaagtggagttaa
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integrated database retrieval system
