Gossypium arboreum (tree cotton): 108457042
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Entry
108457042 CDS
T05776
Name
(RefSeq) protein TRANSPARENT TESTA 9 isoform X1
KO
K19513
protein CLEC16A
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108457042
03029 Mitochondrial biogenesis [BR:
gab03029
]
108457042
Membrane trafficking [BR:
gab04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
108457042
Mitochondrial biogenesis [BR:
gab03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
108457042
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
FPL
CLEC16A_C
Motif
Other DBs
NCBI-GeneID:
108457042
NCBI-ProteinID:
XP_017611338
LinkDB
All DBs
Position
13:127023724..127035021
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AA seq
870 aa
AA seq
DB search
MWFSFWRSRDRFSLDELRYLTNQLQKVQIVNDVNKDFVIEALRSIAELLTYGDQHDSSFF
EFFMEKQVMGEFVRILNISRTVTVSLQLLQTISILIQNLRREHAICKLVVERKKPKFAVP
WSFELILTLLDDFIDLPCEIFADYMFSNEHVNYLITYSFDFRNEELLSYYISFLRAISGK
LNKNTISLLVKTQDEEVVSFPLYVEAIRFAFHEESMVRTAVRAITLNVYHVGDEFVNKFI
ASAPQSDYFSNLVSFFRDQCINLSKLFSERPKNPCSESVSAILAKVDEIEDNLYYFSDVI
SAGIPVVGSLITDNILQLLILPLLFPALQIDADSNLKIGAVTSLYLLCCILRIVKIKDLA
NTIAAALLYPLETFAANSEVKINGYVSGNNCTNESEEPLVDSVTLVNAGKLCVDIPNKAT
SSQVHPGGIIAERDFSCSHLSLRETLLSYVTDGDDARALGSLSVLATLLQTKELDESMLD
GIGILPQRKQHKKLLLQALVGEGSGEEQLFSFESGSARDSFSSELDGYLKKLKEQYGVFI
GGAAASPRIHRNQVLDALVKLLCRSDISTEILWDGGWLLRQLLPYSEAEFKSHHLKLLKD
SYRNCRSALVQETKGIWVDLLITVLCDQWKKCKRAIEASSPRKEPKCILLPFQKLNSEDI
PAESSFTAGERMSELVKVFVLLHQLQIFSLGRALTEQPPIQPQIDIPEISRARAAGLDVS
GPKPGTEVKFVHALPCRIAFERGKERHFHFLAVSVGTLGWVLLAEELPLKQNYGMVRVAA
PLAGTNPRIDDKHARWLHLRIRPSTLPFLDAPKSGTPGETRIKSLVDGRWTLAFRDDESC
KTALSMILEEINLQNMEVERRLKPVLDLEL
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgtggttttccttttggagatccagagatcgattctccttagacgaactcagatattta
acgaaccagttgcagaaagttcaaattgttaatgatgttaataaggatttcgttattgag
gcattgagatctattgcggagttgttgacatatggtgatcaacatgattcttcctttttc
gagtttttcatggagaagcaagtcatgggagagttcgtacgtatactgaatattagcaga
actgtgacagtttctcttcagttacttcaaacaataagcattttgattcaaaacctaaga
agagaacatgccatatgtaagttggttgttgaaagaaaaaaaccaaaatttgcagttcct
tggtcttttgagttgattctaacactgttggacgattttattgatcttccttgtgaaatt
tttgcagactatatgttcagtaatgaacatgttaactacctaataacttattcatttgac
ttccgcaatgaagagctactttcttactatatatcattcttaagagcaataagtggaaag
ttaaacaagaacacaatttctctgcttgtaaagactcaagatgaagaagttgtttccttc
ccgttgtatgttgaggcaatacggtttgcttttcatgaagaaagcatggttcgcacagca
gtgcgtgctataacactgaatgtttatcatgtcggagatgaatttgtcaataagttcatt
gccagtgcccctcaatctgattatttttcaaacttggtctcatttttccgggatcagtgc
atcaatttaagcaagttgttttctgaacgtccaaaaaacccatgctcggagtctgtttct
gcgatacttgctaaagtggatgaaattgaggacaatctctactattttagtgatgttatc
tctgctgggattcctgttgttgggagtttaataacagacaacattttgcagcttttgata
cttccattgctgtttccagctcttcaaatagatgctgacagtaacttgaagattggtgca
gtcacttctttgtacctactctgttgcatcttacgcatcgttaaaatcaaggatctggca
aacaccattgctgcagctcttttatatccactagagacttttgctgcaaattctgaagtt
aaaatcaatggctatgtttctggaaataattgcacaaatgaaagtgaagaaccattagtt
gatagtgttactctggtgaatgctggaaaattatgtgttgatataccaaacaaggctacg
tcttcacaggttcatcctggaggcattattgcagagagggatttttcctgttcacatttg
tctttgagggagactttgctttcctatgtcactgatggagatgatgcacgagccctgggt
tctttgagtgtgttggctacattgttgcaaaccaaggaattggatgaatcaatgctagat
ggtattggtattcttcctcagcgcaaacagcacaaaaaactcttgctgcaagctttggta
ggtgagggctcaggtgaagagcaacttttttcttttgaaagtggctccgcaagagatagt
tttagttctgagcttgatggatatttaaaaaagttgaaggaacaatatggagtgtttatt
gggggagcagcagcaagccctcgtatacatagaaaccaggtccttgatgcattggtcaaa
cttctttgtcgatcagatatatctacagaaattttatgggatggtggttggcttttgcga
caattgcttccttatagtgaggcggagttcaaaagccatcatcttaaattgttgaaggac
tcatataggaactgcagaagtgctcttgtacaggagactaaagggatttgggtcgatcta
cttataacagtgctttgtgatcagtggaaaaaatgcaaaagagctattgaggcttcatcc
cctcgaaaggagcccaagtgcattcttttgccatttcagaaattgaattctgaagatatt
cctgctgagtcatccttcactgctggtgagaggatgagtgaattggtaaaggtatttgtg
ctgcttcatcaacttcaaattttctccctcggtagggctttgactgaacagcctcctatc
cagccacaaattgatatcccagaaatatcccgtgccagggcagctggtctggatgtttca
ggtccaaagccaggcactgaagtaaaatttgttcatgcgctgccttgtcgaattgcattt
gaaaggggcaaagaacgtcattttcactttctagcagtttctgtgggcacattaggatgg
gttcttcttgctgaagagttaccattgaagcagaattatggaatggttcgtgttgctgca
ccattggctggtacaaatcccagaatagatgataagcatgcaagatggctacacttacgt
atccgtccatcaacattaccgttcttggatgctcctaaatctggcacacccggtgaaaca
aggataaaatctctagttgacggtagatggaccttagctttcagagatgacgaatcttgc
aaaactgctttatctatgatcctggaggagatcaatctacaaaacatggaagtggagaga
agactaaaaccagttcttgaccttgaactgtaa
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