Gossypium arboreum (tree cotton): 108457057
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Entry
108457057 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108457057 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108457057
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108457057
Surveillance factors
Other surveillance factors
108457057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
108457057
NCBI-ProteinID:
XP_017611361
LinkDB
All DBs
Position
9:complement(22300093..22307557)
Genome browser
AA seq
1681 aa
AA seq
DB search
MADGKLDLPDDLLSSKTSFDHSSLKVLGEAWDGNLEDKGHVGLLEGTKDQAISESNIPLS
PQWLYSKPSDSKVLATGTSGDIRATNSLSHRTSGDSNLKDSWRLDGSQDKKDWRKTAVDL
ESSRRWREEERETSLLGRRDRRKEDRRADISSMRDVSENKLTSSERWNDINSRSSGHESR
RDNKWSSRWGPEDKEKDSRTEKRTEAEKEEALTDKQAFVSGGRIASDRENDSRDKWRPRH
RLEIHAGGAASHHSAPGFGLERGRVEGSTVRFAAGRGRSNANVSLQIGRPKSASVIGSRP
LDKNKSFNTYCYPRGKLLDIYRKQKTVPNFLTVPDEMDHLSPITQKETVEPVAFVPPDAE
EEALLGDIWKGKTTSSGVSYNTARDTSGGKQSSTLNREDSVESEINSTKEGGQRRVLPSD
TGVTHALISDREIDGSINDADEIKSIDKGQVSDLKMQKLPRLEDKESSIHFGEGGELPED
SGSLFDFSSLQATLSHNQIDIKGNYEAHSLESVIPPEDLSLCYLDPQGVIQGPYLGIDII
SWFEQGYFGTDLPVRLADAQDGSPFQELGDVMPHLSMNSGSASSGSAVMRMQLPDSFEGS
LGETISTSASALEFKGSDIGCDHKQSLSAVETSGTDFQLRRLTQSYPSEYQSSEDQSLHE
FVAAQEEEIIFHGRPTSAGVDPSKISGEVQGSFGNPASHLSITDEFSKTNIPSHRDDELH
PFGLLMSELRSPSGLKCSQSSNIASSIGDRGQFLDPLLDTETNFSDHSVVRTVPEQTSFP
EAWPDDYRRNALSNPNIHLGTTGGWPSSHKEHEDNSFGLLRQLISQKLPNEPLQEENHFS
HPFSYSAGFDVEHVQGFDLMLSKNLNRQRSIHHSDPHMEHLLELQFQQQRQLELQRQQQQ
QLELQRQQQLELQRQQQQLELQRQQQQLELQRQQQQLELQRRQQLELQRQQQLELQLQQQ
QQQLELQRQQQLRHHQIKLLQEQQQHLQLPHSQAQQLLLDQLLQHKIPDPGYGQQIFDAA
RDNIIDQVQLRRHLLAELQQNSHASRHLDSSLEQIIQAKINQGALQGQHAEFLDFMSQAK
YGNMLPSEHQLRLQQEHLQAQQLSMALRQQLGMEGNRRLAGSLSVDDVGQFVGNPGSHHQ
AQSVGLNTSGLYQQRLSSLEEHICNLKQNHALEDLPERGIFDPNSTAFGRLTLPVAAPGM
KVDNANSLDLAEHLYMHSNNQLDPFSSGNHSLNQQVLSNVYASHPGAMESFHARKNGQLE
NSWTAKEIPQLNLEAELQRRESEVDSSAWASAGGVNENSKKALMDLLYQKLGIQSMQSSE
IDRQNSTSSSRGRETFWPVSGPQTSNFPFNHFPNQEVHVNNLFPEGHQNSNSSALLQGHL
FGVASSASANHMVNCERLPLKANSGSFAEEQSFLLGIEDPSRSCYADASLMGKSAVDKEI
AELEGKDKENGMKGMSTRNGSVSGSEDNVLEQVETTLDCGDLPSGIHSRHSSLGIDGSGR
LYGYEIGVDKSAGEDVSNDRLPSMLPNGLDKVPQKCPTVPRVSSSQDVFSDQSSLSFVKQ
NNSASLATSDEGKQGTMANLGTMRSVETQASSKKDLRSRRTSSCNDAAVSEASFIEILKK
PVLRGIEAANSTSLEPSDGATQAGRSGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLD
D
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaattagatctacctgatgatctcctctcctccaaaaccagcttcgac
cactcctctctcaaagttttaggtgaagcgtgggatgggaacttggaggacaaaggacac
gtggggttacttgagggcaccaaagatcaagcaatttcagagagcaatatacctttgtct
ccacagtggctttactctaaaccatctgattctaaggtgttagctactggaacatctggg
gatataagagccacaaattcgttgtcccatagaacctctggtgattccaatctgaaagat
agttggcgtctggatgggtctcaggacaagaaagactggaggaagactgcagttgatctt
gaaagcagtcgccgttggcgtgaagaggagagagaaacaagcttacttggccgaagggat
cgcagaaaagaagaccgtcgggcagatatttcatcgatgagggatgtttctgaaaacaag
cttacttcttcagagagatggaatgatattaatagtcgtagttcaggacatgaatctcga
agagacaacaagtggtcttcaagatggggtcctgaagacaaagaaaaggattctcgaact
gagaagaggacagaagctgagaaggaagaagcccttactgacaaacaagcttttgtaagt
ggggggcgcatagcttctgaccgtgagaatgattctcgtgataagtggagaccacgacat
cgtttggaaattcatgcaggtggggctgcttctcatcacagtgctccaggttttggttta
gagaggggacgagtggagggatcaactgtgcggtttgcagcaggacgaggtagatcaaat
gctaatgtaagcctacaaattgggaggccaaaatctgcttctgtcattggatctcgtcct
ctggacaaaaacaaatcatttaacacatattgctaccctagaggaaaactgcttgatatt
taccgcaagcaaaagactgttccaaattttctcactgtacctgatgagatggatcattta
tcaccaataactcagaaagaaactgttgagcctgtagcttttgttcctcctgatgcagag
gaagaggctctccttggagatatatggaagggaaaaactacaagcagtggagtgtcgtac
aacacagctagagacacaagtggagggaaacaaagttctacacttaacagggaggatagt
gttgaatcagaaataaatagtacaaaagaaggtgggcagagacgtgttttaccatctgac
acaggtgtgacccatgctttgatatcagatagggaaattgatggctccataaatgatgct
gatgaaataaaatctattgataaaggacaagtctctgatttgaaaatgcaaaagctacct
aggttggaggataaggaatcatccattcattttggagagggtggcgagcttcctgaagac
tcaggttctctatttgatttttcatcactacaggctaccctaagccataaccagatagat
attaagggaaattatgaggcacattcactggaaagtgttatccctcctgaggatttgagt
ttgtgctatcttgatcctcaaggggtaattcagggaccatatctgggaattgacataatt
tcatggtttgagcaaggttattttggtacagacttgcctgttcgattggcagatgctcag
gatggatctcctttccaagaacttggcgatgtcatgccacacctaagcatgaattctggt
tctgcatccagtggtagtgcagttatgagaatgcaattacccgattcttttgaaggtagc
ttgggtgagaccatatctacttctgcttctgctcttgaatttaaggggtctgacattgga
tgtgatcataagcagtctttgtctgctgttgagacttctggaactgattttcagttaaga
cgacttactcaaagttatccttctgagtatcagtcttctgaagatcaaagcctccatgaa
ttcgttgctgctcaagaagaggaaattatttttcatggaaggcccacaagtgcgggggtt
gatccttctaaaatttctggtgaagttcaaggttcttttggcaatcctgcaagccatttg
tccattacagatgagttttcaaaaaccaatataccttctcatcgagatgacgagctgcat
ccctttggtttgttgatgtctgagttgaggagcccatctggtttgaagtgttctcaatca
tctaatatagcttccagcatcggtgatagggggcagtttttagatcctttgcttgataca
gagacaaactttagtgatcacagtgttgttcgtacagtccctgaacagacttcttttcct
gaggcttggcctgatgattatagaagaaatgctttgtctaaccctaacattcatctagga
actactggtggttggccctcatctcacaaggagcacgaagacaatagttttggcctttta
cgtcagctaatatcacaaaagctgcccaatgaaccacttcaagaggaaaatcatttctct
catcccttttcatattcagctggatttgatgtggagcatgtccagggtttcgatcttatg
ctgagcaaaaatctcaaccgccagagatcaatccatcattcagatcctcatatggaacac
cttttggaacttcagtttcaacagcagcggcagttggaacttcagcgacagcagcagcag
cagctggaacttcagaggcagcagcagctggaacttcagcggcaacagcagcagctggaa
ctacagcgacagcagcagcagctagagttacagcggcagcagcagcagctagagttacag
cggcggcagcagctagagttacagcggcagcagcagttggaactacagctacagcagcag
cagcagcagttggaacttcagcggcagcagcagcttcgtcaccaccaaattaaattgtta
caggagcagcagcaacatctacagctgccacattctcaagctcagcaattgcttcttgat
caattgctgcagcataagatccctgatcctggttatggtcagcaaatatttgatgctgct
agagacaacataatcgatcaggttcagttacgaaggcatctccttgctgaattgcaacag
aattctcatgcttcaaggcacctggattcatcactggagcagatcatccaagcgaagatt
aaccagggtgcactccaagggcagcatgctgagtttttggatttcatgtcacaggcaaag
tatggcaatatgcttccttcagagcatcagcttcgtcttcaacaagaacacttgcaagcg
cagcaattatctatggcacttaggcaacaattaggaatggaggggaatagaagacttgct
ggttcattgtctgtagatgacgttggtcagtttgttgggaatcctggcagtcatcatcag
gctcaatctgtagggttgaatacttcaggtctttaccagcagaggctatcatctcttgaa
gagcatatctgcaatcttaagcagaatcatgctttggaggacctaccagagcgagggatt
tttgaccccaactctacagcatttggcaggttgactcttcctgtagctgctcctggaatg
aaagtagacaatgcaaattctctagatctagcagaacatctttatatgcactccaacaac
caactggatccattttcttcaggtaaccactctcttaaccagcaagttttaagcaatgta
tacgcttctcatcctggtgcaatggagagcttccatgcaaggaaaaatgggcagctagaa
aatagttggactgcaaaagagataccacaattaaatcttgaagcagaactgcaaagaagg
gagtctgaagttgattcaagtgcttgggcatcagctggaggggttaatgaaaactctaag
aaggctttaatggaccttctttaccaaaaacttggtattcaatctatgcaatcatcagaa
atcgatcgtcagaattctacttcatcttccagagggcgggaaaccttttggcctgtttct
gggccacaaacttccaattttccttttaatcattttccaaatcaggaagttcatgtgaac
aacttgtttccggaaggccatcaaaattctaattcaagtgccttgttgcaaggtcatttg
tttggagttgcttcaagtgcatctgccaaccacatggttaactgtgaaagattgcctctt
aaagccaattctggctcatttgcagaagagcagtcattcttgttgggcattgaagatcct
tctcgtagttgctatgcagatgctagcttgatgggaaaatcagctgtggataaagaaata
gcagaactggaaggaaaagacaaagaaaatggaatgaaaggcatgagtacaaggaatggt
tctgtgtcagggtctgaggacaatgtattagagcaagtagagacaaccttggactgtggt
gacctaccaagtggcatccatagtcggcatagttctcttggaatcgatggaagcggcagg
ttgtatgggtatgaaattggagtagataagtcagctggagaagatgtttctaatgatagg
ttaccttcaatgctgccaaatgggcttgacaaagttccacagaaatgcccaaccgtgcca
cgggtttcttcatcccaggatgtcttttctgatcaaagctcactgtcatttgtcaagcag
aataattctgcaagccttgcaacttctgatgaaggaaaacaggggactatggcaaatcta
ggaacgatgaggagtgtagaaactcaggcatctagcaagaaagacctccgttctaggagg
acctcatcttgcaatgatgctgcagtgtctgaagcatcattcattgagattctaaagaag
ccggttctacgtgggattgaggcagctaacagcacttctttggaaccatctgatggtgca
acacaagctggacgaagtggcaagaagaaagggaaaaagggaagacagattgatcctgct
ctactgggtttcaaagtcaccagcaaccgtataatgatgggtgagatccaacgccttgat
gattga
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integrated database retrieval system
