Gossypium arboreum (tree cotton): 108457162
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Entry
108457162 CDS
T05776
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108457162
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108457162
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108457162
NCBI-ProteinID:
XP_017611543
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Position
9:complement(84849601..84854404)
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AA seq
447 aa
AA seq
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MAVSNNWAFASLALLFLLLVAAMATVRTGNVSSNVETEKVQSSKNSTMAARSEEVEPLNE
HAVPDPEAVAAEVESIIDMNIRNVTERRKLGFFTCGTGNPIDDCWRCDPNWQKNRKRLAD
CGIGFGRNAIGGRDGRFYVVTDPNDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIRLKQ
ELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGW
RTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHS
DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ
GNRYAAPTNPFAKEVTKRVDTAEGQWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASS
LGAKSSSMVGAMTSNAGALPCRRGKQC
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcaaacaactgggctttcgcttctttagctcttctgtttttgcttcttgtt
gccgcaatggctactgtacggacaggcaacgtttccagcaatgtggaaacagagaaggtg
cagagctcaaagaactcaacaatggcagctaggtcagaggaggtcgagccacttaacgag
catgccgttcctgacccagaggctgtagcagccgaggtggaatccatcattgacatgaac
attcgcaatgtgactgaaagaaggaagttggggttcttcacatgcggaacaggaaacccc
attgatgattgctggcgttgtgacccaaactggcagaagaaccggaagagacttgctgat
tgtggcattggttttggaaggaatgcaattggtgggcgtgatggacgtttctatgttgtc
actgaccctaatgatgatgaccctgttaaccccaaacctggtacgttgcgtcatgctgtg
atccaggacgagcctctttggattgtgttcaagagggacatggttattcggttgaagcag
gagctgattatgaacagttttaagaccattgatggtcgcggggtgaatgtccatattgct
aatggggcatgtatcaccatccagtatgttaccaatgtgatcatccatggtcttcatatt
catgactgtaagcctactggcaatgctatggtgagaagctcaccgtctcactttgggtgg
aggacaatggctgatggcgatgcaatctccatcttcggttcaagccacatttgggttgat
cacaattctctctctaattgtgctgatggtcttgttgatgctgtcatgggctcaactgcc
attaccatctccaacaaccacatgacccaccacaatgaggtgatgttgctagggcacagt
gactcctacacaagggacaagcaaatgcaagtgaccattgcctacaaccatttcggagag
ggacttatccagagaatgccaaggtgtaggcatggatatttccatgtggtgaacaatgac
tacactcactgggaaatgtatgctataggtggaagtgcaaaccccaccatcaacagccag
ggtaacagatatgcagctccaaccaacccatttgcaaaggaggttaccaagagagtagat
acagctgaagggcagtggaagagctggaattggaggtccgaaggagacttgttactgaac
ggtgcctacttcacaccatctggagctggagcctcagccagctatgccagggcctcaagc
ttgggagccaagtcctcttccatggttggagccatgacttccaatgctggtgctcttcct
tgccgcagaggcaagcaatgctag
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