Gossypium arboreum (tree cotton): 108457191
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Entry
108457191 CDS
T05776
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108457191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108457191
03036 Chromosome and associated proteins [BR:
gab03036
]
108457191
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108457191
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108457191
PBAF complex
108457191
GBAF(ncBAF) complex
108457191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Zn_ribbon_2
Motif
Other DBs
NCBI-GeneID:
108457191
NCBI-ProteinID:
XP_017611590
UniProt:
A0A0B0NFH9
LinkDB
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Position
3:123813914..123820023
Genome browser
AA seq
739 aa
AA seq
DB search
MPASSSDGRGRWKRRKRERRLKHQLEEKDVVPEEDDEEENNDDLDNSGDDAAGVATDPSL
PGSSESEVLAGGGLRISEFPPVVKRTVNCPHGSVMAIVASERAGLIGDSKVHQQVELAVL
ENVSHGQIQSVSTEAPVVDPEKYVITPPPIMEGRGVVKRFGSRVHVLPMHSEWFSPATVH
RLERQVVPLFFSGKSPEHTPERYIECRNQIVVKYMDNPGKRITVSDCQGLVNGINNEDLT
RIFRFLDHWGIINYCAAAPSHEPWKVGSYLREESNGEVHVPSAALKSIDSLIKFEKPKCR
LKAADVYSPLSCHDNDVSDLDNRIRERLSENYCSSCCQPIPTSYYQSQKEVDTLLCSDCF
HDGRFFSGHSSIDFVRVESTKDYGDLDGECWSDQETLMLLEALEIYNDNWNEIAEHVGTK
SKAQCILHFLRLPMEEGLLEDMEVPSMPKSMIVSNGDGCGRLHSNMNGSLPGPNLQDADS
ESRLPFANSGNPVMAMVAFLASVVGPRVAAACAHASLAALSEGENSAINGSIGQNEAEVH
PLPPEKTKAAAKAGLAAAAMKAKLFADHEEREIQRLSANIINHQLKRMELKLKQFAEVET
LLMKECDQVEKTRQRFAAERARIVSTRFSPVGVTSQMSLPGVASSMANNNISNNRQQVMS
TSPSQPQPSVSGYGGNQPVNPHVPFMQRQPMFPMGPRLPLTAMQASTSGSPNVMFNSPGN
TQPTINHPLMRSASGTSSG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttcttcttcagatggtcgaggtagatggaagcggcggaagcgagagcgaaga
ttgaagcaccagctggaagaaaaggatgtggttccggaggaagacgatgaagaagagaac
aacgatgaccttgacaactccggggacgatgccgccggtgtcgccacggatccatcctta
ccgggctccagcgagagtgaggtcctggccggcggtggacttcgcatctcggagttccct
cccgtggtgaagagaaccgtgaactgtcctcacggttccgtaatggcgatcgtggcatct
gaacgggcgggtttgattggggatagtaaggtgcatcagcaggttgagctggcggttttg
gagaatgtttcgcacgggcagatacagtcggtttctacggaagctcccgttgttgatccg
gagaagtatgtgatcacccctcctcctataatggagggtcgtggtgttgttaagaggttt
gggagtagggttcatgtcctgccaatgcattcagagtggttttcaccagccacagtgcat
cgtctagaaagacaagttgtgccacttttcttctctgggaagtcacctgaacacacgcca
gaaagatatattgaatgtagaaaccaaatagttgtcaaatacatggataatcctgggaag
agaattacagtttctgattgtcaggggttggtaaatggtatcaataatgaggatttaact
cggatttttcggtttcttgatcactggggaatcatcaattattgtgcagctgcaccaagt
catgagccatggaaagttggatcctacttaagggaggaatcaaatggtgaggttcatgtg
ccatcagctgctttaaagtctattgatagtttgatcaaatttgaaaagccgaaatgtagg
cttaaggcagcagatgtttattccccattgtcatgtcatgataacgatgtctctgacttg
gacaacagaatacgagagcgcttatctgaaaactattgtagttcttgttgtcagcctatt
cccacctcatattatcagtcacaaaaggaggttgatacgctactttgttctgattgcttc
catgatgggagatttttttctggtcattcaagcatagattttgttagggtagagtcaaca
aaagattatggtgacctagatggagaatgttggagtgatcaggaaacgctaatgctgctt
gaggcattggaaatttacaatgacaactggaatgaaatagctgagcatgttggtaccaag
tcaaaagcacaatgcatacttcattttttacgtctacccatggaggagggtctattggaa
gatatggaagtcccaagcatgcccaaatcaatgatcgtttcaaatggagatggctgtgga
agattgcactcaaatatgaatgggagtctaccagggcccaaccttcaagatgcagattcc
gaaagcaggcttccttttgcgaattctggaaatccagtaatggctatggttgcttttctg
gcctctgttgttggacccagagttgctgcagcttgtgcccatgcatcattggcagctttg
tctgaaggtgagaactcagcaataaatggatctattggtcaaaacgaggcggaggttcat
ccactacctccagaaaaaactaaagctgctgccaaagctggtcttgctgcagcagctatg
aaggcgaaactctttgcagatcatgaggaacgagaaattcaaagactgtcagctaatatc
ataaaccatcagttgaaaagaatggagctgaagctgaagcagtttgcagaagtagaaacc
ttactcatgaaagaatgtgaccaagtggagaaaacaaggcaaaggtttgctgcagagagg
gcccgcattgtatcaactagattcagtcctgttggtgtcacatcacaaatgagtcttcct
ggtgttgcttcttccatggcaaacaataacatcagcaacaacaggcaacaagtaatgtca
acctcgccttcacagccacaaccaagtgtttctggatatggcggcaaccagccagtaaat
ccccatgtgccattcatgcaacgtcaaccaatgtttccaatgggcccaaggttgcccctt
acagccatgcaggcatccacttcgggatctccaaatgtcatgttcaactccccggggaat
acacaacccactattaaccatccattaatgaggtcagcatccgggactagctctggttaa
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