Gossypium arboreum (tree cotton): 108457216
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Entry
108457216 CDS
T05776
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108457216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108457216
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108457216
mRNA degradation factors
5'-3' decay
Decapping complex
108457216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
108457216
NCBI-ProteinID:
XP_017611635
LinkDB
All DBs
Position
9:78230128..78234669
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AA seq
363 aa
AA seq
DB search
MSQSGKLMPNIDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIDSNQWSRKDVEG
SLFVVKRNAQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNAAQEVNGMWFYNS
RECQDVANLFSRILNAYSKVPAKPKVSASKSEFEELEAVPSMSVIEGPLEPPATASPTTN
APEDSSFVNFFSAAMNLGTNAPDGTNSIQPYHSISTTPPSSHVAAVVSAPVPTPPVPSLP
PAPPSLDSVSSSNRVTNLIKPSSFFAPPTSSSSSLMMPPISSSTPTASALHPPLNLQRPY
GTPLLQPFPPPTPPASLTPSAPPTLHDGTHISRDKVRDALLVLVQDDQFIDMFYQALQKV
HHS
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagagtggaaaattgatgccgaatatcgatcaacaaagcacgaagatgctcaat
ctcactgttctccaacgaatagatcctttcatagaggaaattctgatcactgccgctcac
gtcaccttctatgaattcaacatcgacagcaatcaatggagtcgaaaagatgttgaagga
tctctctttgttgttaagaggaatgcgcaacctcggttccagttcattgtaatgaatcgg
cgtaacacagataatttagtggagaatttgttgggagatttcgagtatgaggttcaagtc
ccttacctattgtatcgaaatgctgcacaagaagttaacggcatgtggttctataattct
cgtgaatgtcaggatgttgctaacctctttagtagaatacttaatgcatattcaaaagtt
cctgcaaagccaaaagtatctgcaagcaaaagtgaatttgaggaactagaagcagttcct
agcatgtctgtaatagaaggccccttggagccgccagcaactgcctctcctactactaat
gcacctgaagattcttcatttgttaacttctttagtgctgctatgaatctcggaactaat
gctcccgatggtacaaattcaatacagccttaccattctatctcaaccacccctccatct
tctcatgtagcagctgtcgtctctgctccagtgccaactccaccagtgccgtcccttcct
cctgctcctccttcactcgattcagtaagtagcagcaaccgagtgaccaatctcattaag
ccttcttccttttttgctcctcctacctcatcatcctcctcattgatgatgccacctatc
tcttcatcaacaccaactgcttctgctcttcatccacccctcaacctgcaacgtccttat
ggcactcctctgcttcaaccttttccaccacctactccacctgcatctcttactcctagt
gcacctcctactttgcatgatggaactcatattagcagggataaagttcgtgatgcactt
cttgtgcttgttcaggatgatcaattcattgacatgttctaccaggcattgcaaaaggtg
catcactcatga
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