Gossypium arboreum (tree cotton): 108457241
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Entry
108457241 CDS
T05776
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04120
Ubiquitin mediated proteolysis
gab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108457241
04120 Ubiquitin mediated proteolysis
108457241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108457241
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108457241
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108457241
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
FlxA
zf-C3HC4_3
zf-ANAPC11
CENP-Q
zf-RING_16
GTP-bdg_M
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
108457241
NCBI-ProteinID:
XP_017611685
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Position
9:71508547..71514984
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AA seq
542 aa
AA seq
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MMRLRTYAGLSLVTTLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQL
TKRLFLGSLREAEVERLNEQSWREVMEILFAITIFRQEFSVPFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPKLAHVRIVSFLGFLLLLDSLFLYSSIKFLIQTRQASVSIFFAFEYM
ILATTTMSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELSASDATCIICREEMT
LAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSSSGGQHGTWSDAPRQGSST
SSATQGPGVEMATDDLTPHQARLQAAAAAASIYEKSYVYPSANTLVWSPGNAVLPGSYAP
LADTMKVEHSGESPSIGHQQFAIPGGLPNLPFPQFPNCVFVPFQLPGANGNSGGGGSGSN
QNLSDSQLEAQKKTIEQQIEVLQRQLQLLQMHKSKTEESSDIGLTTSSDSKGKGVASSSS
EE
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcgaacatatgctggtctcagtttagtcacgacactagcagttatatat
catgcattcaacagcagaggccagttttatcctgctatggtttatttatcaacctctaag
atcagcttagtgttgcttctcaacatgggccttgtagttatgtgtatcttatggcaatta
actaaacggttattccttgggtctcttcgagaagctgaggttgagcggttgaatgagcaa
tcatggagagaggtcatggagatcctctttgcaatcactatctttcggcaggaattctct
gttccatttcttgcaatggttactgctctattgttaatcaaggctttgcattggttggcg
cagaagagggttgagtacattgaaacaaccccttccgttccgaagttagcgcatgttcgg
atagtttcatttctgggttttcttcttctgcttgattctctgtttttatacagttctatc
aagtttctgatccaaacacgacaagcttcagtttccatcttctttgcatttgagtacatg
atactggcaacaacaacaatgtcaacttttgtaaaatatgttttctatgtgagtgacatg
cttatggaagggcaatgggagaaaaaagctgtatataccttctacttggagctcatccga
gacttgcttcacttgtctatgtacttgtgcttctttcttgtgattttcatgaattatggt
gtacctctgcacttaatacgggagctttatgagacatttaggaattttaaaattcgtgtt
gctgattacttgcggtatagaaagatcacctcaaatatgaatgatagattcccggatgca
acccctgaagaactctctgcaagtgatgcaacatgtattatatgtcgcgaagagatgacc
ttagcaaagaagttaatttgtggacatctttttcacgtccactgccttcgatcatggctg
gagaggcagcatacctgtccaacctgcagagcacttgttgtaccacctgaaaacggaaca
agttcatctggagggcaacatggaacttggtcagatgctcctcgacaagggtccagcacg
agttcagctacacaaggtcctggtgttgagatggccactgatgatttgacccctcatcag
gcgaggctgcaggctgctgctgctgcagcatcaatatatgagaaatcctacgtctatcct
tctgcaaacacattagtttggtctccaggaaacgctgtacttccagggtcttatgcgcca
ttggctgacaccatgaaggtggaacatagtggggaaagcccatccattggacatcaacag
tttgccattcctggtggactgccaaacttgccctttccacaattcccgaactgtgttttt
gttcctttccagttacctggtgccaatggaaactcaggaggaggaggatcagggagtaat
cagaatctttcagattcccagttggaggctcagaagaagactattgaacagcagattgag
gtactgcaacgtcaacttcagctcttgcagatgcacaagtcaaaaactgaggaaagctca
gacattggtctcacaacctcatcagatagtaaaggaaagggcgttgcatcttcttcttct
gaagagtaa
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