Gossypium arboreum (tree cotton): 108457313
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Entry
108457313 CDS
T05776
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108457313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108457313
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108457313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
108457313
NCBI-ProteinID:
XP_017611790
UniProt:
A0A0B0P6K0
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Position
9:44964577..44973008
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AA seq
943 aa
AA seq
DB search
MDENFDEQNKLPELKLDAKQAQGFLSFFKTLPNDPRAVRFFDRRDYYTAHGENATFITKT
YYRTTTALRKLGSGSNGLSSVSVNKNMFETITRDLLLERTDHTLELYGGSGSNWRLVKSA
SPGNLSSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGFSYVDLTKRILGLAEFLDDSH
FTNVESALVALGCKECLLPLESGKSSECRTLSDALTRCGVMVTERKKTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFEFAPAALGALLSYAELLADEGNYGNYSICRYNLGSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVSEINSRLDLVQAF
VEDTELRQDLRQHLRRISDIERLMRNIQRTRAGLQHIVKLYQSSIRVPHIKSALEKYDGQ
FSSLIKERYLDPFELLTDDDHLNKFIALVETSVDLDQLENGEYMISPSYDDALATLKSEQ
ESLERQIHNLHKQTAFDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTTATFSEVFEHLAGFLSELD
VLLSFADLASSCPTPYTRPRITPPDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCEKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATENSLVIIDELGRGTSTYDGFGLAWAICEHIVEAIKAPTLFATH
FHELTALAHENGNYELQKKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPTSIISTDAGQEQEGSKRKRGYDADDISRGAAKAHK
FLKEFAELPLETMDLKQALQQVTKLKDDLQKDANNSEWLQQFF
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgatgaacaaaacaagcttccagagctcaaactagacgctaagcag
gctcaagggtttctctcatttttcaaaactctaccgaatgatccaagggctgttcggttt
tttgatcgccgggattattatactgctcatggtgaaaatgcaacctttatcactaaaaca
tattatcgtactactactgctctccggaaactcggtagtggctcgaatggtctttcaagt
gtaagtgttaataaaaacatgtttgaaacaatcacccgtgatcttctcctggagagaaca
gaccacactctggagctctatggaggtagtggctccaattggaggttggtgaaaagtgcc
agtcctgggaatctgagcagttttgaagatgttctctttgccaacaatgagatgcaggat
acacctgttgttgtcgcactgcttcctaacttccgtgaaaatggttgcactgttggattt
agttatgttgatttaacaaagagaatacttggtttggctgagtttcttgatgatagtcac
tttactaatgtggagtcagctttagttgctcttggttgtaaggagtgccttttgcccttg
gagagtggaaaatccagtgaatgtagaactctgagtgatgctttgaccagatgtggtgtt
atggtaactgagagaaagaaaactgaatttaaagcaagggatctggtgcaggatcttggt
aggctagtcaaaggctccattgaaccagttcgagacttggtttctgggtttgaatttgca
ccagctgctttaggagccttactttcttatgcagaattactagcagatgaaggaaattat
ggaaactatagcatttgtagatacaatctgggaagctacatgaggttagattctgctgca
atgagggcattgaatgtcctggaaagcaaaactgatgcaaacaaaaattttagtttgttt
ggtcttatgaatagaacctgtactgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagatgtaagtgagataaattcaaggctagatttggtacaggctttt
gtggaggatactgagcttcgccaagatttgagacagcatctaagaagaatttcagatatt
gaacgacttatgcgcaatattcaaaggacaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagagttccccacattaaaagtgccctggaaaaatatgatggacag
ttttcttctttgatcaaggaaagatatttggatccttttgagctcttgactgatgatgat
catttgaacaagtttattgctcttgttgagacttctgtcgacctagatcaacttgaaaat
ggggaatacatgatttcacctagttatgatgatgcactagctacactaaaaagtgagcag
gagtcactagagcgccaaatacacaatttacataaacaaactgcttttgatcttgatctg
ccggtagacaaggcattaaagttagataagggcacacagtttggacatgttttcagaatt
acaaagaaagaagagcccaaagtaaggaaaaagctctccacccaatttattgtccttgaa
acccgaaaggatggagtgaaattcaccaacacaaagcttaaaaagttgggggaccagtac
caaaaggtacttgaggagtataagaattgtcaaaaagagctagtaaatcgagtggttcaa
actactgcaactttctctgaggtatttgagcacttagctgggtttctctctgaattggat
gtcctacttagttttgcagatttagcttcaagttgccctaccccatacacaagacccaga
attactccaccagatgtgggagatattgttttagaaggaagtagacatccttgtgtggag
gctcaagactgggttaattttataccaaatgattgtagacttgtaagaggcaagagctgg
ttccagatcatcacgggacctaatatgggtggaaaatcaacattcatccgccaggttggt
gttaacatactaatggcacaagtaggctgttttgttccttgtgaaaaagctagcatttct
gttcgagattgtatttttgcccgtgttggtgctggtgactgccaactgcgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgagaattca
ttggtgatcatcgatgagttggggcgaggaacatcaacctatgatggatttggtttagca
tgggccatatgtgagcatattgttgaagcgattaaagcacctactctgtttgctacccac
ttccatgaactgactgctttagctcatgaaaatggcaattatgagttgcagaaaaaacag
atcgttggtgtggcaaactatcatgttagtgctcacattgactcatcaagtcggaaattg
acaatgctgtacaaggttgagccaggggcatgtgatcaaagttttggtattcatgtggca
gaatttgccaattttcctgaaagtgttgttgctcttgcaagagaaaaggctgctgaattg
gaagatttctcaccaacttcaatcatttcaactgatgctggacaagagcaggagggttca
aaaaggaagagagggtatgatgctgatgacatatctaggggtgctgcaaaggctcacaag
tttttaaaggagtttgctgagctgccattggagaccatggacctgaagcaggctctgcaa
caagtaaccaagctgaaggatgacttacaaaaagatgcaaacaactctgagtggcttcag
caattcttctag
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