Gossypium arboreum (tree cotton): 108457348
Help
Entry
108457348 CDS
T05776
Name
(RefSeq) autophagy-related protein 16-like
KO
K17890
autophagy-related protein 16-1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
108457348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108457348
03029 Mitochondrial biogenesis [BR:
gab03029
]
108457348
Membrane trafficking [BR:
gab04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
108457348
Others
Specific organelles associated proteins
Auto phagosome
108457348
Mitochondrial biogenesis [BR:
gab03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108457348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ATG16
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
WDR54
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_Vps41
Cytochrom_D1
Beta-prop_RIG_1st
FPP
Beta-prop_NUP159_NUP214
PEP5_VPS11_N
Beta-prop_IP5PC_F
VPS8_N
DUF4606
Fez1
PQQ_2
Motif
Other DBs
NCBI-GeneID:
108457348
NCBI-ProteinID:
XP_017611855
LinkDB
All DBs
Position
9:89109177..89112527
Genome browser
AA seq
509 aa
AA seq
DB search
MSREVLAREAINHAFKALKKRHLIEEGAHAPAYIALSRPIISQGSEWKEKAENLEMELQQ
CYKAQSRLSEQLVVEVAESRALKASLQEKEMAIAELEKELNQTRDECSQLKTDLEEKIRA
LELLMVEHQELKAQLEQMAIKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDIIER
LKASGLEKLAREQVDGIVRRSEDGAEFFAESTVPSVCSHRINAHEGGCASILFEYNSGKL
ISGGQDRSVKMWDTGTGSLTHNFSGCLGSVLDLAITHDNRFVIAASSSNNLFVWDVSSGR
IRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLQKGYCTNTIIFHSNCNALCFS
TDGLTICSGHVDGNLRLWDIRTGKLLSEVAAHSLPITSISLSRNGNVVLTSGRDNVHNLF
DVRSLEACGTFRATGNRVASNWSRSCISPDDNYIAAGSADGSICIWSISKADIVSTLKEH
TAPVLSCTWSGLGKPLASADKNGIVCTWT
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgagaggttttagcgagggaagctataaaccacgcttttaaggcgctaaagaaa
cggcatttaattgaagaaggagctcatgctcctgcttatattgctctttccaggcctatc
atctcccagggttcggaatggaaagagaaagcagaaaacttggaaatggaacttcaacaa
tgttacaaagcacagtctagattgtccgagcaactagtggttgaagtagctgaatctcga
gctttaaaagcttctctacaagagaaagaaatggctattgccgaattggagaaggaattg
aaccaaaccagggatgagtgctctcagctaaagacagatttagaagaaaaaattcgagct
ttggaattgttgatggtcgagcatcaagaactgaaagctcaattagaacaaatggctatt
aaagctaaaaacgcagaggctgaaaataagatgttagttgatcgttggatgcttcaaaaa
atgcaggatgctgaacggcttaacgaggcaaatgcgctttacgaagatataattgagcgg
ctaaaggccagtggtttagaaaaacttgcccgagaacaagtggatggtattgtccgtaga
agcgaagacggtgctgagttctttgcggaatcaaccgttccttctgtttgctcacacagg
atcaatgcacatgaaggtggttgtgcttccatactgtttgagtacaattccggcaaattg
atcagtgggggacaggatcgatcggtcaaaatgtgggacaccggtaccggatctttaacc
cataacttttccggttgccttggttctgtccttgatcttgcaattactcatgacaataga
ttcgtaatagcagcaagtagttcaaacaacttgtttgtatgggatgtcagctcgggacgg
atccgacatactctcacaggtcacacagataaagtctgtgccgtagatgtaagcaaagtt
tcgagtcgtcatgtcgtgagtgctgcttatgatcgaacgataaaagtgtgggatctgcag
aaaggttactgcaccaacacgataattttccacagcaactgcaatgcactttgcttcagc
acagatggactgactatatgctcaggtcatgtcgacgggaatctccgtttatgggacatt
cggaccggaaaattacttagcgaagtcgcggcacattcacttcccatcacatctatctct
ctgtcccgaaacggaaatgtcgtattaacgagtggtagggataatgtgcataatttattc
gatgtacgatctttggaagcttgtggtacattcagagcaaccggaaatagggtagcatca
aattggagtcgctcgtgtattagtccggatgacaattatattgctgctgggtctgctgat
ggatccatatgcatttggtcgatatcgaaagccgacatagtaagcactttgaaggaacat
actgcacctgttctgtcttgtacatggagtggacttggaaaaccattagcctctgcagat
aagaatgggattgtctgtacttggacatga
DBGET
integrated database retrieval system
