Gossypium arboreum (tree cotton): 108458252
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Entry
108458252 CDS
T05776
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gab03009
]
108458252
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
108458252
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WD40_WDHD1_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
108458252
NCBI-ProteinID:
XP_017613062
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Position
1:12338936..12343653
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AA seq
474 aa
AA seq
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MEMGEKMNKEALVVCSDKSTGIGITVWDLETGEQLLHIPTCAAAPHGLFCLRNQFIVASQ
SNRHGSFGGGSIFIWPLNKPQSPLRSYTLEAMGPISCTKDGLYIAGGATSGNAYLWEVTS
GRLLRTWHAHHKSLKCMVFSDDDSLLIFGCTDGIISVWSMISLVDVEDSGSSPSLLYYSS
EHRSSITGLVTMSAGARSIFISSSLDGTCKVWELVSGRHLQTLVYPMSVTAIAFHPIERL
LFSGSVDGNIFVNVLDIGAVEDCFVTTEDQAFVLKVHNESITALTFSGFHLISASEDFTF
CLWDTINRVVLRRFNNRKGAVTNMVVIKQSSLFPISNHQRVTHQFQVSLLQKYPQPSNPG
KGMATFLSFPASHSKPPPTHFHGNNLLDHLISGSEQEEQTPAMLQTKLEKNIDDRLWVTS
MTKHVMEISKHLQCRLLDMMQCRLLCNPYELDSSPKKKRHKIQSQNQTPTEQSE
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggagatgggcgaaaagatgaataaggaggcattagtggtttgtagtgataagagtacg
ggtattgggataaccgtgtgggacttggaaactggggaacaactccttcatatccccacc
tgtgctgccgctcctcatgggctgttttgtttgagaaaccagttcattgtagcttctcaa
agcaacaggcatggctcttttggtggtgggtctatctttatttggccattgaacaagcct
cagtcaccattgcggagctacacattggaggcaatgggccccatttcttgcacaaaagat
ggcttatatattgcgggtggagctacttccgggaatgcttatctttgggaggttaccagt
ggaagattgctgagaacatggcatgctcatcataaatcactgaagtgtatggtcttctct
gatgatgattcacttcttatttttggttgtaccgatggaatcatctctgtttggtctatg
attagtttggtagatgtggaagattctggaagctcaccttctttgctctattactcatca
gaacatagatcttccataactgggttagtaactatgtccgctggtgcacgttccattttc
atatcaagctctctcgatggaacatgcaaggtttgggaactagtttctggaaggcattta
caaacattagtttatccaatgtcagtgacagccatcgcttttcatccgatagagcggctc
cttttttctggtagtgtagatggaaatatatttgttaatgtgcttgacattggagcagtt
gaggattgtttcgttactacggaagatcaagcatttgtgctaaaagtacacaatgaatct
ataactgcattgacttttagcggatttcatctgatatctgcatcggaggattttacattc
tgcctatgggatacaattaaccgggtggtccttagaagattcaacaatagaaaaggtgca
gtgactaatatggttgtgattaagcagtcttcattgtttcccatctcaaaccatcaaaga
gttactcatcaattccaggtgtctttgctccaaaagtatcctcagccttccaacccaggg
aaggggatggctacgttcctttcttttccagcttcccacagcaagccacctcccactcat
ttccatggaaacaatttgctagaccatttaatatcaggttcagagcaagaagaacaaaca
cctgctatgctgcaaacgaaattggagaaaaacatagacgatcgactatgggtaacaagc
atgacaaagcatgtaatggagataagcaagcatttgcaatgtcgtttgctggatatgatg
cagtgccggttgctatgcaacccgtatgaactagattcatccccaaagaaaaaaagacac
aaaattcagtctcaaaatcaaactcctacggagcaatctgagtaa
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