Gossypium arboreum (tree cotton): 108458445
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Entry
108458445 CDS
T05776
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04120
Ubiquitin mediated proteolysis
gab04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108458445
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108458445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108458445
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108458445
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108458445
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108458445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR55
zf-C3HC4_2
Beta-prop_WDR19_1st
Beta-prop_DCAF4
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
zf-C3HC4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
WD40_like
zf-C3HC4_3
zf-RING_2
Beta-prop_WDR75_1st
zf-C3HC4_4
zf-RING_UBOX
Beta-prop_DCAF12
Beta-prop_SCAP
zf-RING_5
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
U-box
RING_XB3-XBAT31
zf-rbx1
zf-RING_10
Beta-prop_IFT122_2nd
zf-Nse
Motif
Other DBs
NCBI-GeneID:
108458445
NCBI-ProteinID:
XP_017613332
UniProt:
A0A0B0PUV5
LinkDB
All DBs
Position
10:815193..821053
Genome browser
AA seq
678 aa
AA seq
DB search
MGGTLVPTATKSEPPSPPPPPMESAAPSIPPPPPMPPPLMEEEPSEADIDKDALCPICMQ
IIKDAFMTACGHSFCYMCILTHLRNKSDCPCCSRYLTNNHIFPNLLLNKLLKKISARQSA
RNASPVENLRQTILQGCEVSAKELDSLLSLLVDKKMKMEQSEAETNMQILLDFLNCLRKK
KLEELTQIQNDLQFIKEDTTAVKKRTMELYTAKERCSMNLRMLVDDFSAEKPLPSLIDQY
NNDAISGGRNSQGWIGSARSQTKVSLKDQANSPGFRSKDANCGSDSTCNTNSGLTAARKR
RIHAQFNDLQECYLQKRQHWTKQFNKQEDEGPTAMDVDGYNPGLQDFQAVLTTFTRYSRL
RVIAELRHGDIFHSANIVSSIEFDRDDEMFAIAGVSRRIKVFEFSAIVNEPADVHCPIVE
MSTRSKLSCLSWNKYTKNHIASCDYDGIVTVWDITTRQSLMEYEEHEKRAWSVDFSRTEP
SMLVSGSDDCKVKVWCTKQEASVLNIDMKANICSVKYNPGSSVHVAVGSADHRVHYYDLR
NISKPLYVFGGHKKAVSYVKFLSNHELASASTDSTLRLWDVKENLPLRAFKGHKNEKNFV
GLTVNSEFIACGSETNEVFAYHKAISKPAASYKFGSDMADVDEEAGSYFISAVGWKSDSP
TLLVANSQGTIKVLVLAA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggacacttgttcccaccgcaactaaatccgaaccgccatcaccaccgccgccg
ccgatggaaagcgccgcgccttctattcctcctcctcctccgatgccgccgccattgatg
gaggaagagccttctgaagctgacattgataaggatgcgctatgtccgatatgcatgcag
attatcaaagacgcttttatgacggcttgtggtcatagtttttgttatatgtgtattttg
actcatcttcgaaataagagcgattgtccttgttgttctcgttatctcactaataatcac
atcttccctaatttattgcttaataagttattgaagaaaatctctgctcgtcaatcagca
aggaatgcctctccggtagaaaatcttcgtcaaacaatactgcagggttgtgaggtgtca
gccaaggagctggatagtttgttgtctctacttgttgacaagaagatgaaaatggagcaa
agtgaagcagagacaaacatgcagattctgcttgatttcttgaactgtctaaggaagaaa
aagcttgaagagcttactcagattcaaaatgatcttcaatttattaaggaggacacaact
gctgtaaagaaacgtaccatggaattgtatacagcgaaagagagatgctccatgaatcta
aggatgcttgttgatgatttctctgcagaaaaacccttgccttcattgattgatcaatat
aataatgacgctatatctggaggtcgcaactcgcaaggctggataggttcagcaaggtca
cagaccaaggttagtttgaaagaccaagcaaattcaccgggattcagaagtaaagatgca
aattgtgggtcagattctacatgcaatactaattcaggattgactgcggcaagaaagagg
cggattcatgcacagtttaatgacctacaagagtgttacttgcaaaagcggcagcattgg
accaaacaatttaataaacaggaagatgaaggtccaactgcaatggatgtagatggttat
aatcctggtcttcaggattttcaggcagtgctaactacatttacacgatacagtcggttg
agggtcattgctgaacttaggcatggtgatattttccactctgctaacattgtctcaagt
atagaatttgatcgtgatgatgagatgtttgctattgctggagtgtcaaggcgcatcaag
gtttttgagttttctgcgattgtgaatgaaccagcagatgtgcattgtcctattgttgaa
atgtccaccagatctaagcttagttgcttgagttggaataagtacacaaaaaaccatatt
gctagctgtgattatgatgggatagtaactgtctgggacattactactcggcagagtttg
atggaatatgaggaacatgaaaagcgagcttggagtgttgatttttcacgcaccgaacct
tcaatgcttgtctctggcagtgatgactgcaaggtcaaagtttggtgcacaaagcaagaa
gccagtgttctgaacatcgacatgaaagcaaacatttgttctgtcaagtacaatcctgga
tccagtgttcatgttgcagttggttctgctgatcaccgtgttcactattatgacttgaga
aacatcagcaaaccgctatatgtgtttggtgggcataagaaagctgtttcatatgtgaaa
tttttgtctaaccatgaattggcttctgcttcaactgacagtacactgcgcttatgggat
gtaaaagaaaatttaccactgcgcgctttcaagggtcacaaaaatgagaagaattttgtt
ggcctcacagtaaacagtgagttcattgcttgtggcagtgaaacaaatgaagtatttgca
tatcacaaggctatatctaaacctgcagcttcgtataaatttggatccgacatggctgat
gtcgatgaggaagccggatcttacttcatcagtgctgtgggttggaagagcgatagcccg
acactacttgtggcaaatagtcagggaacaattaaagtgctcgtgcttgcggcttaa
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