Gossypium arboreum (tree cotton): 108458866
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Entry
108458866 CDS
T05776
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108458866
03036 Chromosome and associated proteins [BR:
gab03036
]
108458866
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108458866
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108458866
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
Spt6_S1
HHH_3
HHH_9
Tex_central_region
Tex_N
Tex_YqgF
S1_RRP5
HTH_44
RuvX
Motif
Other DBs
NCBI-GeneID:
108458866
NCBI-ProteinID:
XP_017613753
LinkDB
All DBs
Position
4:complement(3129259..3138708)
Genome browser
AA seq
1788 aa
AA seq
DB search
MKRKGLTSTYEDNPGEEGEENMEALDDDDEEENRENLDQFECDGFIVDDEEEEEDENDQV
LKSKKTKKKKRKMRSVKDPVLYDDDSELVQENRISGICQFPKETEMCKRLKKAGKFTKVV
EQSGSSSDEGLLFDDIFGEEEASFCGQTYEMSDFIVGEEKSYGEGLSLRWLKMNKKKMEQ
VVTICSSALDDKVPITDDANQTLNHQKQVQASKMNLDNSSEFEPFLLANKYTTERDDLIR
QTDIPERMQMIEEIAGPLPLDKRSIEEETIWIHNQLVMNSYILFCKKRTEERSVEVSVLL
NKIKKEDIMRFLELHHVEKFDVPFIAMYRKEQCLSLLDDFEQNEVENEDNDDVGQAGQVK
WHKVLWIIKELDKMWLLLQKHKSVLQMHQRKIYDEECLKIDNSEKYTLNKQLFESISKSL
NEAETKEEIDDVDAKFCLHFLSAEEKMDGKFKRPIRKSLYSNCMMAGLWKLASQFRYASE
QLSLQIALEKMDMEFRDYPDEPPEEIALNFTCAMFETPELVLKGARHMAALELSCEPCIK
KHIRSIFREKVVVSTNPTPEGNVTIDCFHQLSSIKWLRDKPLSEFNDAQWLLIQKAEEEK
LLQVSIKMPETTLNKLIIGFSDVYLIEGAGRSAQLWKEQYKLILHDAIFNFMLPAMEKEA
RNFLTARAKHWLLMECGKELWKMVSVGPYSCNVILGSVESVAPKVMACCWGPGKPATTFV
MLDSSGVLLDTLEARSFSLRSQTVDDQQRKKNDRQRVLKIMKSHQPHVIVIGAANASCVR
LRDDVKEIISKLEENLRDLGQATGGISVVFGDESLPQLYEHSEISSDQLPEQPGIVKRAV
ALGRYLQNPLAMVATLCGANKEIVSWKLSSLDNFLTPDEKYEMIEQVMVDVTNQVGVDIN
FAVRHDWYFPLLQFVSGLGPRKASILQRETVQYRAVNSRKELASFGLKTEKVFHNAAGFL
CVRSSRLPCTSFDGTRIHPESYELAERLAEAVCNNITETPLEYVKNEPQVLSTFGISDFS
DNYEKETGENRRETFYLIKMELLHGFLDPRKPYKAPSPEEEFNMICGKNGTAVAEGRFVQ
AIVRHVRPQQAFCVLDSGLTGIIMKDDFLDEDDDCSLQNKLHEGDHVSCKIKQIDKSKCQ
ALLTCKESEMKRIKYENFGEVDPYYHEGGIIPLNQQHKSCIEEKLGKEHFMPRTISHPCF
RNVAMDEAMEFLSDKDAGESIFRPSSRGPSYLTLTLKVFTELYVNKDIAESGKDHKDIKS
MLHLGKTLKIGDKTFVDLDEVMDRYVAPLVKHLKEMLGFRKFKRGSKAEVDGILTAEKAE
YPLRIVYYFGVSYEHPGTFILSYIRSKNLHHEYIGLLPNGFRFRKQTFEKIEHLVGYFQT
NINALQHKSLALESLPIKNSPGAYTGDGRQGQFNYSKVRDFSGGRNHRNSDGDEDVGKKH
PSGIPRPRNAPSRVSSDIATKCSSYIDIALNNENLPGGWSSGGNWDKNDGIKNSEWSKNS
ERKWGQSGNNAPQDDSGSDTKNGDSGGNDEGWHVSGNNGGRFRGRGGRRGRGPGDGGRHS
SSWGGKRDVRSSGDSFDSNGAWHAGGNNAGDRGRGRGRGCSRSQSWGGKEESGSGGNDGA
WNSSRNDAGGRGRGRGRGCSRSHSWGGKEESGSGSNDGAWNSSGNYAGGYGHNGGRSYGG
RNGNWDGVRRGRSGSARRGRGNERESEFRPKSFNWGSSNEIRKWNHDAKMNFPGDTKGSW
GHDNVTNDGDRSCGNVWNSNASRGGNSCWGRHVPGNQGRWSSGGGNGW
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaaagggttaacatcaacgtatgaagacaacccaggggaagaaggggaagaa
aacatggaagcacttgatgatgacgatgaagaagaaaacagggagaatttggaccaattt
gaatgtgatgggtttatagtggatgatgaagaggaggaagaagacgaaaatgatcaagtt
ttaaaaagcaagaagacgaaaaagaaaaagaggaaaatgagatcagtgaaggatcctgtt
ctgtatgatgatgatagtgaattggttcaagaaaacagaatttcaggcatttgtcaattt
ccaaaagaaactgaaatgtgtaagcggcttaaaaaggctggaaaatttactaaggtggtt
gagcaatctggttcttcttctgatgagggcctgctatttgatgatatattcggtgaagag
gaagcttcattctgtggtcaaacctatgagatgagtgattttattgtgggtgaggaaaaa
tcttatggagagggattatctctaaggtggttgaagatgaacaaaaagaagatggagcaa
gttgtaaccatttgttcatctgccttagacgacaaggttcctattactgatgatgccaat
cagaccctaaaccatcagaagcaagttcaagcttcaaaaatgaacctggataattctagt
gagtttgagccctttttattagccaacaagtatacaactgagagggatgatcttatcagg
cagactgacatcccagagaggatgcagatgattgaagaaatcgcggggcctcttccactt
gataaaaggagcatagaagaggagactatttggatacataatcaacttgtaatgaattca
tatatattgttctgcaagaaaagaactgaagaaagatctgtagaggtatctgttctactg
aacaaaattaagaaggaagatattatgaggttcctggaattgcatcatgtggagaagttt
gatgttccatttattgccatgtatcggaaggagcaatgtctgagtctgctggatgatttt
gagcaaaatgaggttgagaatgaagataatgatgatgttggacaagcagggcaagtgaag
tggcataaggtactttggattataaaagaattagacaaaatgtggttgctccttcagaag
cataagagtgtgcttcaaatgcaccaaaggaaaatttatgatgaggaatgtctgaagatt
gataacagtgaaaagtatactttgaataagcagttattcgaatcaatatcaaagtctctc
aatgaagctgaaacgaaggaagagattgatgacgtggatgcaaagttctgcttgcatttt
ctgtcagctgaagagaaaatggatggaaaatttaagaggccgataaggaaatccctttat
agtaactgcatgatggctggcttatggaaactagccagccagtttcggtatgcctctgag
cagctcagtttgcagattgctttagagaaaatggacatggagtttcgagattatcctgat
gaaccacctgaggagatagcattaaattttacgtgtgctatgtttgaaactccagaacta
gtgcttaaaggtgctaggcacatggctgcattggagttgagctgtgagccatgtatcaag
aaacacatccgcagcatatttagagaaaaagttgtagtttcaacaaacccaactcctgaa
ggaaatgtgactatagattgctttcatcagctttcaagcattaagtggctacgcgacaaa
ccactttctgaattcaatgatgctcaatggcttcttattcaaaaggctgaagaagagaag
ctccttcaagtttctataaaaatgccggaaactacactgaataaattgatcattggcttt
agtgatgtctacttaatcgaaggagctggaagatctgctcagctttggaaagaacagtac
aagttaattctacatgatgctatcttcaacttcatgcttcctgctatggagaaggaagct
cggaactttttgactgccagagcaaaacactggttgcttatggaatgtgggaaggaacta
tggaagatggtttctgttggtccttattcatgcaatgtaattcttgggtcagtggaaagt
gttgcaccgaaagtaatggcttgctgctgggggcctgggaagcctgcaacaacatttgtg
atgttagactcatcaggagtattgttggatacattggaagccaggtccttctccttgagg
tcacaaaccgttgatgaccagcagcgcaagaaaaatgatcggcaacgtgtccttaagatc
atgaaaagtcaccaaccacatgtcattgttattggtgcagcaaatgcatcttgtgttcga
ctgagagatgatgtgaaagagatcatttctaaattggaggaaaatcttagagaccttggt
caagctacaggtgggattagtgttgtttttggtgatgaatccttgcctcagctttatgaa
cattctgagatttcgtcagatcagcttccagaacagccaggcattgttaagcgagctgtt
gctcttggccgttacctccaaaatccattggctatggttgccacgctttgcggagctaat
aaagagatagtatcttggaagcttagctctttagataactttttaacacctgatgagaag
tatgagatgattgaacaggtgatggtcgatgtgacaaatcaggtaggtgttgatataaat
tttgcggtgagacatgattggtattttcctttgcttcagtttgtttccggacttggacca
cggaaagcttccatcttacaaagggaaactgttcaatatcgagcagttaatagtagaaag
gagttggctagttttggacttaagacagaaaaggttttccataatgcagctggtttctta
tgtgtccgtagcagtcggctgccatgtactagctttgatggtacaagaattcaccccgag
tcatatgagcttgcagagagattggctgaggctgtatgtaataatattacagagacacct
ctagagtatgtaaaaaatgaaccacaagtgttgagtacatttggtattagtgatttttca
gataattatgaaaaagagaccggtgaaaatagaagagagaccttttatcttattaagatg
gaattgctccatggatttctagaccctcgtaaaccttataaagcaccatcccccgaagaa
gaattcaatatgatatgtggaaaaaatgggactgctgttgctgaaggaagatttgttcaa
gctattgtacgccatgttcgaccacaacaagctttttgtgtgcttgattcaggcttgact
gggataataatgaaggatgactttttggatgaggatgatgattgttctttgcaaaacaag
ttgcatgagggggaccatgtatcgtgtaagattaagcagattgacaagagtaaatgccag
gctcttctgacttgcaaagaaagtgaaatgaagaggatcaaatatgaaaattttggtgaa
gttgatccttactatcatgaaggtgggatcattccgttaaaccagcagcacaaaagctgt
attgaggagaagctcggaaaagagcatttcatgccacgaacaattagtcatccttgcttt
agaaacgtggcaatggatgaagcaatggagtttctatcagataaggatgccggtgaaagt
atatttcgtccaagttcaagaggcccatcttatttgactctaactttaaaagtctttact
gaactttatgttaataaagacattgctgaaagtgggaaagatcacaaggatatcaaaagc
atgctccatcttgggaaaacattaaagataggggataaaacttttgttgatttagatgag
gttatggatcgttatgttgctccactggtgaagcacttgaaagaaatgctaggtttccga
aaattcaagaggggttcaaaagcagaggttgatggaatcttgacagctgagaaagcagaa
taccctttgaggatagtttattatttcggagtttcttatgagcatccaggaactttcatc
ctgtcatacataagaagtaaaaacctacaccatgaatatattggattgcttccaaatgga
ttcagattcaggaaacaaacatttgagaagattgaacatctcgtgggatattttcagacg
aacatcaacgcattgcagcacaagtcactggcccttgaaagtcttccaatcaagaattct
ccaggagcatatactggtgatggtaggcaaggccagttcaattatagcaaggtcagagat
ttttcaggaggaaggaaccatagaaacagtgatggagatgaagatgttgggaaaaagcat
ccaagtggaattcctaggccacgcaatgcccctagtcgcgtctcttccgatattgctaca
aaatgcagtagttatattgatattgccctcaataatgaaaatctgcctggtggatggtcc
agcggcggaaactgggataaaaatgatggcatcaagaacagtgaatggagcaagaatagt
gagagaaaatggggtcaaagtggtaataatgctcctcaggatgattctggcagtgacacc
aaaaatggtgatagcggtggcaatgatgaaggttggcatgttagtggaaacaacggtggt
cgatttaggggtcgtggtgggagacgtgggcgtggtcctggagatggtgggcgtcatagc
agtagttggggtggcaaaagagatgttcgaagtagtggtgacagctttgatagcaatgga
gcttggcatgctggtggaaataatgcaggtgatcgtggtagaggacgtggacgtgggtgt
agtagaagtcaaagttggggtggcaaggaagagagtggtagtggtggtaatgatggagct
tggaattccagtagaaacgatgcaggtggtcgtggtagaggacgtggacgtgggtgtagt
agaagtcacagttggggtggcaaggaagagagtggtagtggtagtaatgatggagcttgg
aattccagtggaaactatgcaggtggatatggccacaatggaggacgtagttatggtggt
aggaacggcaattgggacggtgtcaggagaggtcggagtggaagcgcaagacgtgggcgt
ggtaatgagagggaaagtgaattccgccccaagtccttcaactggggtagcagcaatgag
attaggaagtggaaccacgatgcaaaaatgaacttccctggtgatactaaaggaagttgg
ggccatgacaatgtcactaatgatggagataggtcttgtggtaacgtatggaatagtaat
gccagtagaggcggaaatagctgttggggtcgccatgttcctggaaatcaaggccgttgg
agttctggtggtggcaacggctggtaa
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integrated database retrieval system
