Gossypium arboreum (tree cotton): 108460140
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Entry
108460140 CDS
T05776
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108460140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108460140
Enzymes [BR:
gab01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
108460140
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
108460140
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
108460140
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
108460140
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108460140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
Zeta_toxin
nSTAND3
AAA
AAA_22
AAA_17
AAA_25
Viral_helicase1
AAA_29
Motif
Other DBs
NCBI-GeneID:
108460140
NCBI-ProteinID:
XP_017614993
UniProt:
A0A0B0MPM7
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All DBs
Position
4:complement(110783533..110787581)
Genome browser
AA seq
700 aa
AA seq
DB search
MEMDIDGACKPKDEEGKAKGKPIVAILVGAPGSGKSTFCENVMLASSRPWVRVCQDTINN
GKSGTKPQCLKSAAASLKEGKSVFIDRCNLDKEQRVDFVNLGGPEVEVHAVVLDLPAKLS
VSRIVKRTGHEGNLQGGKAAAVVNRMLQNKELPKLSEGFSRITFCRNETDVDAAIKTYIA
VGPLDTLPHGCFGQKDPNAKTQLGIMRFLKRPHETNTRDSVPSQLTEDKGPCGKTQETVS
SSSGMASQKIKVSEDMAPGSISQDESDIPTLAFPSISTADFQFDLEKASDVIVGKVEEFM
DKLGNARLVLVDLTERSKILSLVRAKAAEKKIDSKRFFTFIGDICQLYTKGGLCCNVIAN
AANWRLKPGGGGVNAAIFNAAGPALEAATKEQARSLLPGNALVVPLPSTSPLYSKERVTH
VIHVLGPNMNPRRPNCLDNDYVKGCKVLGDAYSSLFKGFLSIANTQVKVPRSSGSILSGP
SKLEDEISGTKTKTWAPCLQALYNIAMQPEKHSKQVLEASDDVVVLNDIYPKAKQHLLVL
ARIKGLDTLADARKEHLPLLMTMYEVGLRWVDKFVGEDASLVFRLGYHSVPSMRQLHLHV
ISQDFDSKHLKHKKHWNSFTTAFFRDSVDVIEEINNQGKATIQDEKRLMSMELRCHRCRS
AHPNIPRLKSHISSCQAPFPADLQKKGRLVPEQTNSGCDP
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggacatcgatggcgcctgtaaacccaaagatgaagaaggaaaggcaaagggg
aagccaatcgtggcgattttggtgggcgcaccaggaagcggcaagtccactttttgcgag
aacgtaatgctggcctcttcacgtccctgggttcgcgtctgccaggatactattaataat
ggaaaaagtgggacaaagccacagtgcttaaagagtgcagccgcttcattgaaagagggc
aagagtgtatttattgatagatgcaacttagataaagagcagcgggttgattttgtaaat
cttggtggtccagaagtggaagtgcatgctgttgtgcttgatctccccgccaagctttct
gtatcccgtatagtcaaacgcactgggcatgagggaaatctgcaaggtggaaaagctgca
gcagttgtgaatagaatgctgcaaaacaaagaattgcctaagctgagtgaagggttttct
cggatcactttttgccggaacgagactgatgttgatgctgctattaaaacctacatagca
gtcggtcctttggacactcttccacatggctgttttggtcagaaggatcccaatgccaaa
actcaacttggtataatgaggttcttaaaacgaccccatgaaactaatactcgggattct
gtcccttctcaactcactgaggataagggtccatgcggcaaaacacaagaaactgtttca
tcatcgtcaggcatggctagtcagaagataaaggtcagtgaagacatggcgccaggttct
attagtcaggatgaatctgatattccaactctggcatttccatctatttctacagcagat
ttccaatttgacctagagaaggcatctgatgttattgttgggaaagtagaggaattcatg
gataagctcggtaatgccaggcttgttttagtggacttgactgagagatcaaagattttg
tctttggttagggctaaagcagcagaaaagaaaatcgactccaaaaggttctttacattt
ataggagatatatgtcaactttatacaaagggaggtttgtgctgcaatgtaatagctaat
gctgccaactggcgtctgaagcctggaggtggaggcgtaaatgccgcaattttcaatgct
gctggtcctgccctagaggctgcaaccaaggagcaggctagatctcttcttcccgggaat
gcccttgttgtccctctgccatcaacttctcctttgtattctaaggaaagggtgacccat
gtgatacatgttcttgggccaaatatgaacccacgtagaccaaattgtctagacaatgac
tatgttaaaggttgcaaagttcttggggatgcttactcatcactgttcaaagggttttta
tccatagcaaatacccaagttaaggttcccaggagtagtggaagtattttgtcagggcct
tcaaaactagaagatgagattagtggaactaagacaaaaacgtgggctccgtgccttcag
gctctctataacattgccatgcagcccgagaagcatagcaagcaagtgcttgaggcatct
gacgatgttgttgtactaaatgatatatatccaaaggcaaaacagcatcttttggtgttg
gcaagaattaaaggtcttgataccttggcggatgcacgcaaagagcaccttcccttgtta
atgacaatgtacgaagtgggtttgagatgggttgataagtttgtaggtgaagatgcatca
ttggttttccgcctaggttatcattcggtcccttcgatgcgccaactgcacctgcacgtt
attagccaagatttcgactccaaacatctcaagcataagaagcattggaactctttcacc
actgcatttttccgtgattctgtagatgtaatagaggaaattaataatcaagggaaagca
acaattcaagatgagaagagactaatgtcaatggagttgcgttgccaccggtgtagaagt
gctcaccctaacattcctaggctaaaatcacatatcagcagctgccaagctcctttccct
gcagatctacagaaaaagggtcgattagtgcctgagcaaactaactctggctgtgacccc
tag
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