Gossypium arboreum (tree cotton): 108460381
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Entry
108460381 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108460381 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108460381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108460381
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108460381
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108460381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
108460381
NCBI-ProteinID:
XP_052878062
LinkDB
All DBs
Position
11:7379568..7396732
Genome browser
AA seq
2414 aa
AA seq
DB search
MLNLSSTLSTHVRFLLQSLTEANADSVSRDLCQFIEYGIEGSILVLQTCLDCLNSHKTDS
KNLQSEQVVASIFRHAMDKPNFCTVFCQSLRSMDISENFLENFSKAMQFSMSEKIGIGLA
LSDSENPDIKICGKNFCMAQIEELNSNTASFDSTEQIQNVVMFLQCSGALSKHVDSFMQM
LSLVQANGAAQFILTPILSDESHGANFLRKMDFFTESGENDFDALLEEMEKEMSMADIIK
ELGYGCTVDVAHCKEILSLCLPLTEMTIARILGTIVLTYAGLEDNQTMFSTFSLALGCNT
SYDLPSLSSWNIDVLVKTIKQFAPGTNWIRVIENLDHEGFYIPSEAAFTFFMSVYQHACQ
DPFPLHAICGSVWKNSEGQLSFLKYAVSAVPDVFTFDHSSRKLAYMDAVYGHKLHLANEN
HAWLCLDLLDVLCQLAERGHTIFVRSMLDYPLKHCPEVLLLGMAHVNTAYNLLLHDVTST
VFPMIIKNALGAGMVLELWNVKANLVLRGFVEVHNSEPDGMIRILEVCQELKILSSVLEM
IPFPSGIRLAVLASRKEVIDFEKWLSSNLNTYKDVFLEECLKFLKEIQFGGSQEFSATPF
HHSTAVLNLYLEASSTIIKVLKANTGVIASTQLLEEMERLHVTIMDSTPKLQNGGSTESS
TSDGYGDDIEAEANSYFHQMFSEQLTTDAMVQMLARFKDSSVRREQLIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRCVLDALRKPADSKMFLFGTKALE
QFVDRLIEWPQYCNHILQISHLRATHSELVAFIERALIRISSGHLEPDGSNNPSVHHQAS
SQVTPVNGELNSSSIAQPGPQLSSQLQLPRHDSSHDDRIKAPAASSNDVKPLVSSVGQPS
VAPLSDASSIQKVSQSVGSGSSMLSASPGFVRSSRGITSTRFGSALNIETLVAAAERRET
PIEAPASEIQDKISFIINNISVANIEAKGKEFTEILKEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKALTKEIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILSLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDMKDISPTSLLKDRKRELEGNPDFSNKDVGVSQAPV
VAEVKSGIISPLNHVDLSLEGASPPNSGGPTHLLSQYAGPLRLSSGALVEDEKLAALGLS
DQLPSAQGLFQATPSQSPFSVSQLSTSIPNIGTHVIINQKLSSLGLHMHFQRVVPIAMDR
AIKEIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNSLQGLSVGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIA
TQLSLRRKHRDPTFFDPSMYGQGSVGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSG
QNSHSMSASPSSLSGDAGLTGTFGSTSGQGTPGYTSGPGTLGQLDVTSEAIETSSAALLS
ASSIHIGAGAALTQQTTENDPLNASFPSTTLAPELHSVETTDAVKELGPTPQPLPSSAVT
ERLGSSISEASLSTRDALDKFQLVALKLESLVTTDGREADIEGLISEVAEIILRCVSRDE
AALAVAQKVFKGLYENASNSLHVNAHLAILAAVRDVCKLAVKELTSWVIYSDEERKFNKD
ITVGLIRSELLNLAEYNVLMAKLIDGGRNKAATEFAMSLLQTLVTDESRVISELHNLVDA
LAKVASKPGSSESLQHLIEMIRNPSASMAVLSSASIGKEDKTRQSRDKKAPGHTPASRED
NSNIEALEPDPAGFKEQVSMLFAEWYQICELPGANDGPCNHYIVQLHQNGLLKGDDMTER
FFRIITELSVAHCLSSEVMNSGTLQSPQQVQTLSFLAIDIYAKLVVSILKFCPVEQGSSK
LFLMSKILTVTVRLIQKEAEDKKAAFNPRPYFRLFINWLLDLGSLDPVPDGANFQILTAF
ANAFHALHPLKVPAFSFAWLELVSHRSFMPKLLTGNGQKGWPYIQRLLVDLLQFLEPFLR
NAELGVPVHFLYKGTLRVLLVLLHDFPEFLCYCHFTFCDVIPPSCIQMRNIILSAFPRNM
RLPDPSTPNLKIDLLPEIREPPRILSEVDAGLKAKQMKADVDEYLKMRPQGGSTFLTELK
QRLLLSPSEAASAGTHYNVPLINSLVLYVGMQAIQQLQSRVPHAQSAASTAPMSVFLVSA
ALDIFQTLIADLDTEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAEANQEIIQEQITR
VLLERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPV
DDSIVSGWVSDNAH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctttcgtccacgctctcaactcacgttcggttcctgctccagtccttgacc
gaagccaacgccgactcagtttctcgagacctctgccagttcatcgaatatggtatagag
ggaagcattctggtgttgcagacctgcttagattgcttgaactctcacaagacagattca
aagaatttgcaatctgaacaagttgtagcatcgatttttagacatgcaatggacaagcca
aatttttgtactgtcttctgtcagtcactaagaagtatggatatcagtgagaactttttg
gagaatttctcaaaagcaatgcagttttccatgtctgagaaaattggcattggtcttgct
ttatctgattctgaaaatcctgatataaaaatctgtgggaagaatttctgtatggctcag
attgaggaactgaactcgaatactgcctctttcgattctactgagcaaattcagaatgta
gttatgttcctccagtgctctggtgctctttccaagcatgtagattcctttatgcagatg
ttatctctagttcaagctaacggtgctgcacagtttattttgactccaatactttcagat
gaatcacatggggctaatttcttaaggaaaatggatttcttcactgaatctggagaaaat
gattttgatgcacttttagaagaaatggagaaggaaatgagcatggctgatatcattaag
gaactaggctatggatgcactgttgatgttgcacactgcaaagaaattttatctctttgc
ttacctctaacagagatgactatagctagaatacttggcacgattgtcctcacctatgca
gggcttgaggacaaccaaaccatgttttcaacatttagcctggcccttggttgcaacacc
tcatatgatttgccttcattgagctcctggaacattgatgttctcgtaaaaactataaag
caatttgctcctggtaccaactggattcgtgttattgaaaacctggatcatgaggggttc
tacattcctagtgaagcagcattcacttttttcatgtctgtatatcaacatgcatgccag
gacccctttccactccatgccatttgtgggtccgtgtggaagaatagtgaaggtcagcta
tcttttctaaaatatgctgtatcagcagtgccagatgtatttacctttgaccattcttcg
aggaagctggcctatatggatgcagtgtacggccataagcttcaccttgcaaatgaaaat
catgcctggctgtgtcttgacctcttagatgtgctatgtcaactagctgaaaggggtcac
accatctttgttcgatcaatgcttgactacccgttaaaacactgccctgaagtcctgctt
cttgggatggcacatgttaatactgcttataatctcctcctgcatgatgtaacttccaca
gttttcccaatgataattaagaatgctctgggtgctggtatggtacttgaactatggaat
gtgaaggctaatcttgtcttgcggggatttgtagaagtacacaacagtgagccagacggc
atgattagaattttggaagtttgtcaagagttaaagattctatcatcagtgctggagatg
ataccttttccttctggcattagattagcagtccttgcttccaggaaagaggtcatagat
tttgaaaagtggttgagtagtaacctgaatacatataaagatgttttcttggaggagtgc
ctaaagttcttgaaggagatacagtttggtggatcacaagagttttctgccacacctttc
catcatagtactgcagttttgaatctttatttggaagctagttctaccattatcaaggtt
cttaaagctaatactggggtgatagcctctactcagcttctcgaggaaatggaaaggttg
catgtgacaataatggattctactccaaagttgcaaaatggtgggtccacagagtcttca
acctctgatggatatggagatgatattgaggcagaagcaaactcttactttcatcaaatg
ttttctgaacagttgactactgatgcaatggttcaaatgcttgcccgattcaaggattct
tctgtgagaagggaacaactgatatttgagtgcatgattgcgaatctgtttgaagaatac
cgatttttccccaagtatccagaaagacagctcaaaattgctgcagttctctttggctct
gttatcaagcatcaacttgtaactcacctcactcttggaattgccttgcgttgtgttcta
gatgcattgcgtaaacctgcagattcaaaaatgtttttgtttggaaccaaggccttggag
cagtttgtggatcgtctgattgagtggccgcagtattgcaaccatattttacagatatct
cacctgcgtgccactcattcagagcttgttgctttcattgaacgagctcttatcaggatt
tcatcaggtcacttggagccagatgggagcaacaatccttctgttcatcaccaggcttcc
tctcaggtgaccccagtaaacggggagttaaatagctctagcatcgctcagccagggcca
caactttcttctcaacttcagcttccaagacatgatagttctcatgatgatcgtattaaa
gcccctgctgcatcttccaatgatgtgaaaccactggtgtcttctgtagggcagccttca
gttgctcccttgagtgatgcttctagtattcagaaagtatcgcaaagtgtaggcagtggt
tcgtctatgctgtctgcttcccctggttttgttcgatcttctcggggcattacttctact
aggtttggctctgctttgaacattgaaacactagttgctgctgctgagagaagagagacg
cccatagaggctccggcatctgagattcaagacaagatatcattcataatcaataatatt
tcggttgcaaatattgaagctaaaggaaaagagttcactgaaatcctgaaagagcagtac
tatccttggtttgcccaatacatggttatgaaaagagcaagcattgagccaaattttcat
gatttgtatttgaagtttcttgacaaagttaactcaaaggctttgactaaggagatcatc
caggctacatatgagaactgcaaggttttgttgggatctgagcttataaaatcaagctct
gaagagcggtcgttgctaaaaaatttgggtagttggcttgggaagttaacaattggccga
aatcaagtcctgagagctcgtgaaatagatcccaaatctctgattatagaggcgtatgag
aaggggctaatgattgcagttatcccatttacttcaaagattcttgagccgtgtcaaagc
agtctggcataccaaccccctaatccttggaccatgggcattctgtcattactagctgag
atttactcaatgccgaacttgaaaatgaatctcaagtttgacatagaggttctattcaag
aaccttggtgtggatatgaaggacatttcaccgacttctcttctcaaggatcgtaaaaga
gaactcgaggggaatcctgatttttctaataaagatgtcggggtatcccaagccccagtg
gttgcagaagttaaatctggaataatttctccacttaatcatgttgatttatctcttgag
ggtgctagtccaccaaattctggtggccccacacatttgttatcacagtatgctgggccc
ttgcgtctttcttctggtgcattggtggaggatgaaaaactagctgctttaggcctgtct
gatcagcttccttctgcacaaggactatttcaagccactccatcacagtcacctttttct
gttagtcagctgtccacgtcaattcctaacattggaactcatgttattatcaatcagaag
ctcagttctctaggcttgcacatgcacttccagagggtagttccaattgcaatggacaga
gctatcaaagagattgtagctggtattgttcagcgcagtgtttctatagcaactcaaaca
accaaggagcttgttttaaaggattatgctatggaatcagacgagacacggatctataat
gctgcacacttgatggttgcaagtttggctggaagtctagcgcatgttacatgcaaggaa
cctttacgtggctctatatcaagtcagctgaggaattcacttcagggtttgagtgttggg
agtgatcttctagaacaagctgttcagcttgttactaatgataaccttgatcttggctgt
gcagtgattgaacaggctgctactgataaggcaatacaaacaattgatggagagatagct
actcaactttctttaagaagaaagcatagagatcccacattttttgatccaagcatgtat
ggacaaggttctgtgggtgttgtgcctgaggctcttcgacctaaaccaggtcacttgtct
ctctctcagcagcgagtgtatgaggactttgttcggcttccttggcaaaatcaatctggc
cagaattcacattctatgtctgctagtccttcaagcttatctggtgatgctggtctaacc
ggcacatttggttcaacatcagggcaaggtacccctggttacacatctggccctggaact
ctgggacaattggatgttacttctgaggcaattgaaacttcgtcagctgctcttttaagt
gcttcctcaattcatattggcgcaggagctgctcttacccagcagactactgaaaacgat
cccctcaatgcttcattcccttcaacaactttggcccctgaattgcattcggtggagacc
actgatgcagtaaaagaactgggacctacaccacagccgttaccttcatctgccgtaacc
gagcgtcttggaagtagcatctcggaggcttcattgagcacaagggatgcattggataaa
tttcagcttgttgctctgaagttggaaagtttggtgacgactgatggcagagaagctgac
attgagggactgatctccgaggtagctgaaatcatactcagatgtgtaagtcgggatgag
gctgcacttgctgtggctcaaaaggttttcaaaggcttatatgagaatgcatccaatagt
cttcatgtcaatgctcatcttgctattctggcagctgtccgtgatgtttgcaagcttgct
gttaaggagcttactagttgggtgatatattcggatgaggagcgaaagttcaacaaagat
atcacagttggccttattcgaagtgaattgctgaaccttgcagagtacaacgttcttatg
gcaaaacttattgatgggggaaggaataaagctgctacggaatttgcgatgtcacttctt
caaactttggttactgatgaatccagagtcatctcagaactccacaatcttgttgatgct
ctggcaaaggttgcttcaaaacctggatcttctgaatcattgcaacatttgattgagatg
atcagaaatccttctgcaagtatggcagttttatccagtgcttctattggaaaggaggat
aagactaggcagtctagagacaaaaaggcacctgggcacacaccagctagcagggaagat
aatagtaatatagaggctctagaaccagatcctgcaggcttcaaggagcaggtttccatg
ttgtttgcagaatggtaccagatctgtgagcttcctggtgcaaatgatggaccttgtaat
cattacattgtacaattgcatcaaaatggactgcttaaaggggatgatatgacagaacgt
tttttccgtattatcacggaactttctgttgcacattgcctatcttctgaagtcatgaat
tctggcacattacaatcacctcagcaagtgcaaactctctctttcctggccattgatatt
tatgcaaaacttgtggtgtcaatccttaagttttgcccagtggaacagggatcaagtaaa
ctctttcttatgtccaagattttgactgtgactgtaagacttattcaaaaagaggctgag
gataagaaagcagcttttaatccaagaccatatttcagattatttattaattggctgtta
gatcttggttccttggaccctgtccctgatggtgcaaattttcagatcttgactgccttt
gccaatgcatttcatgctctccatccccttaaagttcctgctttcagttttgcatggctg
gagcttgtcagtcacagaagtttcatgccaaaattgctcaccgggaatggtcagaagggt
tggccctatatccaacgattgctggtagacttgcttcaattcctggagccgtttttgagg
aatgctgagctcggagtgccggttcattttctgtataaaggcacactcagggtgctgctg
gttctacttcatgacttccctgagttcctgtgttattgtcattttaccttctgtgatgtg
attcctccgagctgcatacagatgcgaaatattatccttagtgcttttccacgcaatatg
aggttaccagatccatctactcccaacttaaagattgatttgcttccggaaatcagagaa
ccccctcgcatcctttctgaggttgatgctggtctgaaggcaaaacagatgaaggctgat
gtagatgagtatctcaagatgaggccacaaggaggatctacatttctaactgaactgaaa
caaagactactcctttcaccaagcgaggcagcatcagctggtacccattataatgttcca
ttaatcaactcactggtgctatatgtcggtatgcaggcaattcagcaactgcagtcgaga
gtacctcatgcacagtcagcagcaagcactgctccaatgagtgtgttcttagttagtgct
gccttagatattttccagactctaatagcagaccttgataccgaggggcgttatcttttt
ctcaatgcaattgcgaaccaattgcgatatccaaacaaccatacacattacttctccttc
atcttactatacttatttgccgaagcgaatcaggaaattatccaagagcaaatcacaaga
gttttgttggaacggctgattgttaataaacctcatccttggggtctcctcattaccttc
attgagctcataaagaatcctagatacaacttctggaatcgatctttcataaggtgtgca
cccgagattgaaaaactctttgaatctgttgcaagatcatgtgggggcttgaaacctgtg
gacgatagtatcgtttctggttgggtttctgacaacgcacactag
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integrated database retrieval system
