Gossypium arboreum (tree cotton): 108460414
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Entry
108460414 CDS
T05776
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03030
DNA replication
gab03410
Base excision repair
gab03420
Nucleotide excision repair
gab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108460414
03410 Base excision repair
108460414
03420 Nucleotide excision repair
108460414
03430 Mismatch repair
108460414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gab03032
]
108460414
03400 DNA repair and recombination proteins [BR:
gab03400
]
108460414
DNA replication proteins [BR:
gab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108460414
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108460414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_22
AAA_30
PTCB-BRCT
Rad17
AAA_19
AAA_assoc_2
Gp44_lid
nSTAND3
AAA_18
RuvB_N
BRCT_2
AAA_24
AAA_5
Zeta_toxin
AAA_14
AAA_16
Sigma54_activ_2
AAA_28
RsgA_GTPase
NTPase_1
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
108460414
NCBI-ProteinID:
XP_017615387
LinkDB
All DBs
Position
4:3230669..3242359
Genome browser
AA seq
990 aa
AA seq
DB search
MSDIRKWFMKAHDKGKGNGTASNPADAAETKTDSVPGGQENSGRRKTSKYFPAEKQKPKD
EQENEELPVKRKVQDESSEKAPPSKKPSKVDVDDDFVLPKSKNSVDVTPSKKLKSGSGKG
VAQKAVDIDGSDEDDVKDLKSPVKSGGKVRGGRGASKGPAGGRGRGGDIDESDEEDIKDL
ESPVKSGGRGRGGRGASTGSASGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLNG
LTFVISGTLDSLEREEADDLIKRYGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKF
LTEDGLFDMIRASNHGKAPLKGQSNKSAVTVAPSLPKKSPQKTEVKTTLTKSPSPSVSSA
KKREQPVQHSSLPWTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKGKGKKQN
DAGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKADANVSKGIGGSNANS
IKELVSNEALGVNMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIRISKIPIICICND
RYSQKLKSLVNYCLLLSYRKPTKQQMAKRLMQIANAEGLQVNEIALEELAERVNGDIRMA
LNQLQYMSLSMSVINYNDIKQRLLSSSKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMS
DPDLVPLLVQENYINYRPSSIGKDDSGIKRMNSIARAAESIGDGDIINVQIRRYRQWQLS
QTSALSSCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMSKNYRLLEDFHVHFLASR
ESCSGRETLRLEYLPILLKRLTNPLRDMPKDEAVKQVLEFMNAYSISQEDFDTIVELSKF
QGYPNPMEGIPSAVKAALTKAYKEGSKTRIIRAADLVTLPGMKKAPKKRIAAILEPSDDV
LGEENGDELPENDENTSDSEDLEGTTNGEKLQAELQSLNSKGIEVQMELKGTGNSSAKKA
PSGRAKGGGRAASAEKKGGRGSGAGAKRKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatattaggaagtggtttatgaaagcacatgataaaggcaaaggcaatggcact
gcttcaaatccggcagatgcagcagaaaccaaaacagattctgtacctggaggccaagaa
aattctggcagaaggaaaactagtaagtattttcctgcagaaaagcaaaagccaaaagat
gaacaagaaaatgaggaacttccagtcaagagaaaagttcaagatgaaagtagtgaaaaa
gccccaccttcaaagaaaccaagcaaagtcgatgttgatgatgactttgttctgcccaaa
tctaagaactctgtcgatgtcactcctagtaagaaactgaagagtggttcaggcaagggt
gttgcacaaaaagctgtagatattgatggaagtgatgaagatgatgttaaagatttgaag
tctcctgtaaagtcaggtggaaaggttcgtggtggcaggggtgcatcaaaaggcccagct
ggcggaagaggcagaggtggtgatattgacgaaagtgatgaagaggatattaaagatttg
gagtctcctgtgaagtctggtggaaggggtcgtggtggtaggggtgcatcaacaggatca
gctagtggaagaggcagaggtggtggacggggtggatttatgaattttggagaaaggaaa
gaccctccacataaaggagagaaggaagtccctgaaggtgcccctgattgcttaaatggt
ctaacttttgtaattagtggaacacttgacagtttagaaagggaagaagcagacgaccta
atcaaacgatatggtggtcgtgttactggatctgtcagcaaaaaaacgaattatctttta
tgtgatgaagatattggaggtcgaaagtcctctaaagccaaagagcttggcactaaattt
cttactgaggatggattgtttgacatgatccgtgcttcaaatcatggaaaagctcctttg
aaaggacagtcaaacaaatctgcagtcaccgttgctccttctctacctaagaagagtccc
caaaagacggaagtgaagacaacattaaccaaaagtccgagtccaagtgtctcatctgcc
aagaaaagagagcaaccagtccagcattcatctctgccatggactgaaaaatataggcca
aaagttccaaatgaaatcactgggaatcagtcactggttaaacaactccatgattggctg
acacaatggaacaagcaatttcttggtactggaagcaagggaaagggcaaaaagcaaaat
gatgctggtgctaaaaaggctgttctattaagtggaacacctggaattgggaaaactaca
tcagcaaagttggttagtcagatgctaggtttccagaccattgaggtaaatgctagtgat
agtcgtggaaaggctgacgccaatgtttctaaaggaataggtggaagcaatgcaaattcc
ataaaggaactagttagcaatgaagccttgggtgttaatatggatcgttcaaaacatcca
aagactgtcctaattatggatgaggtggatggcatgtctgctggtgatagaggtggcatt
gctgatcttattgctagcataaggatttccaaaataccaatcatttgcatctgtaatgac
cgctacagtcagaaactgaagagccttgtaaactactgtttgcttctcagttaccgtaaa
cctacaaaacagcagatggcaaagagattaatgcaaattgcaaatgctgaaggtcttcaa
gttaatgagattgctcttgaggaacttgcagaaagagtgaacggagacattcgtatggcc
ctaaatcagttgcagtacatgagtctgtccatgtctgttattaattacaatgacataaag
caacgccttcttagcagttccaaggatgaagatatttcccccttcacagctgttgataag
ctgtttggttttaatggtggaaagttgaggatggacgaaagaattgatctaagcatgagc
gatcctgatctagtcccacttcttgttcaggaaaattatatcaattataggcccagttca
attggtaaagatgacagtggaattaaacgaatgaactcaattgcccgagctgctgagtct
attggtgatggtgatataataaacgtgcagattcgaagatatcgacagtggcagctctca
caaactagtgccctttcatcatgtatcattcctgctgcattgctacatggacaaagggag
acgcttgaacagggagaacgcaatttcaatagatttggtgggtggctgggaaagaattca
accatgagcaaaaattataggcttttggaggattttcatgttcatttccttgcttctcgt
gagtcttgttcaggaagagaaactcttcgacttgaatatctcccaattcttctgaaaaga
ttgaccaatccgcttcgagacatgcctaaggatgaagctgttaagcaggttttagagttt
atgaacgcttactcaataagccaagaggatttcgatacaatcgtggagttatctaaattc
cagggctatccaaatccaatggaaggcattccatcagctgtcaaagcagcactgacaaaa
gcatacaaggaaggaagcaaaacacgaattatacgagctgcagatttagtaactcttcct
ggaatgaaaaaagccccaaagaagcggattgctgcaattctagaaccatcagatgatgta
ttaggggaggagaatggtgacgaattgccagaaaatgatgagaacacttcagactcagag
gacttggaaggtactaccaatggtgagaagctgcaggccgaacttcagagtttgaattcg
aaaggaatcgaagtacaaatggagttgaaagggacagggaattcaagtgctaagaaggcg
ccatctggtagagcaaaaggtggtggtagggccgcatctgcagaaaagaaaggtgggcgt
ggctcgggagctggtgcaaaaagaaaaaggtaa
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