Gossypium arboreum (tree cotton): 108460450
Help
Entry
108460450 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108460450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108460450
03009 Ribosome biogenesis [BR:
gab03009
]
108460450
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108460450
Spliceosome [BR:
gab03041
]
Complex A
U1 snRNP components
U1 related factors
108460450
Complex B
108460450
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
Helicases
108460450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108460450
NCBI-ProteinID:
XP_017615432
LinkDB
All DBs
Position
4:12159629..12164904
Genome browser
AA seq
679 aa
AA seq
DB search
MAAAATASGGPRYAPPDPTLPEPWKGLVDGKTGYLYFWNPVTNVTQYERPRGIDSVPKSS
SVPMGSSVLVQQSSEGRYRYSSEKENDRHGRGCNAVSKLESILGGNQNSRGGPFHSLIAP
NGTSSYVIGGSFRGQGSAAGESNLFGDAYCRQHEITVSGGEVPPPFSSFESTGFPPEILR
EVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLLPGFMHLKRCRNDPQMGP
TVLVLSPTRELATQIQDEAHKFGKSSRIRCTCLYGGAPKGPQLREIEKGVDIVVATPGRL
NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVRK
IAADLLVNPVQVNIGNIDELVANKSITQYVEVLSPMEKHRRLEQILRSQERGSKIIVFCS
TKKMCDQLARNLTRQFGAAAIHGDKSQADRDFVLSQFRTGRSPVLVATDVAARGLDIKDI
RVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDSKHVSDLIKVLEGADQRVPAE
LRDMASRSGGRGMPRRWAPSSGGRDEGRGGRASSGYGGREGGRGGRGISTSSSSWHERSG
GRGYDRESRDSRGFHDSYDKGRSRSRSPAGWGDRHKTGVRDRSWSCSAERYDSGAGRQRS
PTRSFLEVGMKRDRLSPSQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctgcgactgcctctggtggtccacgatatgctccgcctgaccctactctt
cccgaaccatggaaaggcctggttgatggaaaaactggttatctctacttttggaatccg
gtaacaaatgttacgcaatatgagaggcctagagggatagattctgtcccaaaatcttct
tcagtgcctatgggttcttcagttctggttcaacaatcttctgaagggcgttataggtat
agctctgagaaggaaaatgaccggcatggaagaggctgcaatgctgtatcaaaacttgag
tcaatattagggggtaatcagaattcaagaggcggaccatttcattcccttattgcacct
aatgggacttccagctatgtgattggaggatcttttagaggacaaggatcagcagctggg
gaaagtaatttgtttggtgatgcttattgtcgtcagcatgagataacagtatctggaggt
gaagtgccaccgcctttttcatcgtttgaatctactggtttccctcctgagatacttaga
gaggtgcagaatgctgggttttctgctccgacacccattcaggctcagtcatggcctatt
gcactacaaggtagagacatagtggccattgcgaaaactggttctgggaaaacattgggt
tacctacttcctggatttatgcatctcaagcgttgccgtaacgatcctcaaatgggtcca
actgtgttagttttatcaccaactagggagttggctacacagatacaagacgaggctcac
aaatttgggaagtcttcaagaattaggtgcacgtgtttatatgggggggcaccaaagggt
cctcagttgagagagattgagaaaggagtggatatcgtggttgccactccaggccggtta
aatgatattctggagatgaagagaatcagcctccatcaagtttcttaccttgtgttagat
gaggctgatcgcatgttagacatgggttttgaacctcaaatacggaagattgtgaaagaa
gtgcctacacgcaggcagactctaatgttcacagcaacatggccaaaggaggtccggaaa
attgcagcagatctactggtaaatcctgttcaggtcaatattggcaatattgatgagctt
gtggcaaacaagtctattacccagtatgttgaagtattatcacctatggaaaagcacaga
agattggagcagatactgcgttcgcaagaacgaggatccaagattattgttttttgctca
actaagaagatgtgtgatcaacttgctcgtaaccttactcggcagtttggagctgctgct
atacatggagacaaatctcaggctgacagagacttcgtgctgagtcagtttcgcactggg
aggtcaccagtgcttgttgcgactgatgttgctgctcggggattagacattaaagacata
agggtggtaatcaactatgacttccctactggagttgaggattatgttcacaggattggg
aggacagggagggcaggtgcgaccggattggcatatacattctttggtgatcaggattca
aagcatgtgtcagatctcatcaaggttcttgaaggagcagaccagcgggtgcctgcagaa
cttcgtgatatggcttcacgtagtggtgggaggggaatgcctagacgttgggctcccagt
tctggtggccgtgatgaggggcgtggtggacgtgccagttcaggatatggtggtagggaa
ggtggaagaggtggtcgaggaatttccacatcttcatctagctggcatgagagaagtgga
ggccgcggatatgatcgtgagtctcgcgacagtcgtggtttccatgatagttatgacaag
ggaagaagtcgcagtcgaagtcctgcaggttggggtgatcgccataaaactggcgtacgt
gatcgcagctggagttgtagtgctgaaaggtatgatagtggtgctggacgtcaacgttcc
ccaacgcgcagttttcttgaggtggggatgaaacgggaccggttgtctccatcccaatag
DBGET
integrated database retrieval system
