Gossypium arboreum (tree cotton): 108460465
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Entry
108460465 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108460465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108460465
03009 Ribosome biogenesis [BR:
gab03009
]
108460465
04131 Membrane trafficking [BR:
gab04131
]
108460465
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gab04147
]
108460465
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108460465
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108460465
Membrane trafficking [BR:
gab04131
]
SNARE
SNARE associated proteins
Others
108460465
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108460465
Exosome [BR:
gab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108460465
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_2
AAA_16
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
AAA_17
nSTAND3
AAA_28
RNA_helicase
Mg_chelatase
AAA_18
nSTAND_NTPase5
ATPase_2
ABC_tran
Viral_helicase1
Parvo_NS1
AAA_lid_PRS2_C
AAA_7
IstB_IS21
NB-ARC
NACHT
TsaE
Zeta_toxin
DUF815
Vps4_C
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
108460465
NCBI-ProteinID:
XP_017615456
UniProt:
A0A0B0NGJ5
A0ABR0QBN6
LinkDB
All DBs
Position
4:97885087..97889755
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSDSKGAKKDFSTAILERKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLFGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDXEIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPIAKEVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGSRTAASDPFAAAAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgagtcctctgactcgaagggggctaagaaggattttagtacggcg
atcttggaaagaaagaaggcagcaaatcgactcgttgttgatgaggcaatcaacgatgat
aactctgttgtttctcttcatcctgataccatggaaaagcttcagctgtttcgcggtgac
actattctcatcaagggaaagaaaaggaaagatactatctgcattgctctggcagatgac
acatgtgatgaacctaagatcaggatgaataaggttgtcaggtcaaacttgagagttagg
cttggtgatgttgtctctgtgcatcagtgtccagatgttaagtatggaaaacgtgtgcac
atcttgcctgtggatgacacaattgaaggggttactggaaatctctttgatgcttacctg
aaaccttactttctggaagcctaccgcccagtgaggaagggtgatctcttccttgtgagg
gggggaatgagaagtgtagaattcaaggttattgagactgaccctccagagtattgtgtg
gtcgcaccagacactgagatattctgtgaaggagagcctgttaagagggaggatgagaat
agattagatgaggtgggttatgatgatgttggtggagtgagaaaacagatggctcagatt
cgggaactagtggagcttccattgaggcatccacagttatttaaatcaattggcgtgaag
ccacctaaaggaatcttgctttttggacctcctggatctggaaagactttgattgcccgt
gcagttgcaaatgaaactggtgctttctttttttgcatcaacggtcctgagatcatgtca
aaattggccggggagagtgaaagcaatcttagaaaagcttttgaggaagcagagaagaat
gcaccatctatcatattcattgatgaaattgattcaattgctccgaagagagagaagaca
catggtgaagttgagaggagaattgtctctcagctgttgacattgatggatggtcttaaa
tcccgtgcacatgttattgttattggggccacaaatcgtcccaatagcattgatcctgct
cttagaaggtttggaagatttgatnaggagattgatattggtgtccctgatgaagttggc
cgtcttgaggtgctccgtatccacaccaagaacatgaagctggctgaagatgttgattta
gaaagaatttccaaggagacacatggctatgttggtgctgatctcgcagctctctgtact
gaggcagcgttacagtgcatcagggaaaagatggatgtgattgacttggaagatgagaca
atagatgctgagatactcaactctatggcagtctcaaatgagcacttccagactgctctt
ggaacaagcaatccatcagccctgcgtgaaactgttgttgaagtacctaacgtcagttgg
gaagatattggaggcctcgagaatgttaaaagggagcttcaagagactgttcaatatcct
gtggagcatcctgaaaaatttgagaagttcgggatgtcaccctcaaagggagtactattc
tatggccctccaggatgtgggaaaacccttttggccaaagctattgccaatgagtgtcag
gcaaacttcatcagtgtcaagggtccagaattactaacaatgtggttcggagagagtgag
gccaatgtgagggaaatttttgacaaggctcgccagtctgctccttgtgtcctgttcttt
gatgaacttgattcaattgctacccagagaggaagcagcgtgggtgatgcagggggtgct
gctgatagggttttgaaccaacttcttactgagatggatggcatgtctgcaaagaaaact
gttttcatcattggagccaccaaccgacctgatattatagatccagcacttctgcgtcca
ggtcgtcttgatcagttgatctatattcctctccctgacgaggattctcgccatcagatt
tttaaggcttgcttgaggaaatcaccaattgcaaaagaggttgacctcagagctcttgcc
aaatatactcaagggtttagtggggctgatatcacagaaatttgccaacgagcatgtaaa
tatgccataagagaaaacattgaaaaggatattgagagagaaaggagaagaagtgagaac
cctgaagctatggaggaagatgttgaggatgaagtggcagaaatcaagcctgcacatttt
gaggaatcaatgaagtttgctcgtaggagtgtgagcgatgctgacatccgcaaataccaa
gcatttgctcaaacattgcagcagtcgaggggatttggaagtgaatttaggttcgctgaa
actggttccaggactgcagcctctgatccttttgctgctgctgctggaggagctgatgaa
gatgacctttacagttaa
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integrated database retrieval system
