Gossypium arboreum (tree cotton): 108460505
Help
Entry
108460505 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108460505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108460505
03012 Translation factors [BR:
gab03012
]
108460505
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108460505
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108460505
Translation factors [BR:
gab03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108460505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
ABC_tran
Dicer_dimer
Myosin_head
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
108460505
NCBI-ProteinID:
XP_017615508
LinkDB
All DBs
Position
4:3251998..3268081
Genome browser
AA seq
1139 aa
AA seq
DB search
MQNPKLRCFLLGFNFTSARVSTFFDSLPDILPNTSSSARFYLPLRRRLCGYAVEQFSDDE
YECDFESHKASSSVANIDEWKWKLGMLLRSENDQEIVSRDKRDRRDYEQISNLAKRMGLY
SEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGLQRRVEGLLQEYLDRLQLNSGKVG
ENSDIANSIDPAEYVNPDENPDSFLDSSVMEKVLQRRSLRLRNMQRAWQESPEGKKMMEF
RKSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIETGRGAFCSIICTQ
PRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTQLLFCTSGILLRRLLSDRNLN
GITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELFSNYFGGAPKIHI
PGFTYPVRAHFLEDVLEFTGYKLTSFNQIDDYGQEKMWKMQKQLAPRKRKNQITSLVEDA
LNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLR
DQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKIVLATNMAEASITINDIV
FVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFS
EYQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPLAVQNAIDFLKMVGALDEKE
NLTNLGKFLAMLPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKKDLAGTA
KSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFGYILR
EAGLVDEDVAANNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANS
VNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILMLFGGSLSRGAEVGHLKMLQGYI
DFFMDSTLAECYLKLKEELDRLIQKKLQDPSVDILQEGKYLMLAVQELVSGDLCEGRFVF
GRASRKPKDSADNSRFTRDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGM
QFVGKPMKNKQLAERDAAVEALAWLTHTSDNSRGDDGSPLDVTDNMLKLLGKRRRSKRR
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccaaagctcagatgtttccttttgggattcaatttcactagcgctagggtc
tccaccttttttgattcactccctgacatactcccaaatacttcttcttctgccaggttc
tatcttcctctacgacgccgtttatgcgggtacgccgtagagcagttctcagacgatgaa
tacgagtgtgatttcgagagtcataaggcgtcgtcttcggttgccaacattgatgaatgg
aaatggaaactcggcatgctgttacgtagtgaaaatgaccaagaaattgtatctagagat
aaaagagataggagagactatgaacaaatttccaaccttgctaaaaggatgggactttac
agtgaaatgtatggaaaagtggttgttgcaagcaaggttccacttcctaactataggcca
gatttggatgataaacggccacaacgggaggttgttgtaccattaggcttacaaaggaga
gttgagggtttactgcaagagtaccttgatcggctgcagttaaattctgggaaggttggc
gagaattcagatattgctaattccattgatccggctgaatatgtgaacccagatgagaat
ccagattcattcctggatagttctgttatggaaaaggttcttcaaaggaggagtttgcga
ttacggaacatgcaaagagcttggcaggaatcacctgaaggcaagaagatgatggaattt
cggaaatctctgcctgcattcaaggaaaaggaaaggcttctgcaagcaattgcacgtaat
caggtcatagtgatatcgggggagactggatgtggcaagaccactcaacttccacaatac
atattggagtcagaaatagaaactggtcgtggagcattctgtagcataatttgcacacag
cctcgaagaatatctgctatggcagttgcagaaagagtgtctgcagaaagaggagagcca
cttggggaaacagttggttataaagttcgattagagggaatgaaagggaaaaatacccaa
ctacttttttgtaccagtggaattttactcaggcggctgctgagtgaccggaacttgaat
ggtataactcatgtttttgttgatgaaatacatgagcgaggaatgaatgaagattttcta
cttattgtgttgaaggatcttcttccacgtcgccaagatttgagattaattttaatgagt
gccactttgaatgctgagcttttctccaattattttggcggggcacctaaaattcatatt
ccaggttttacgtatccggtcagggcacattttctggaagatgttttggaatttactggc
tataagttgacttctttcaatcaaattgatgattatggccaagagaaaatgtggaaaatg
cagaagcaacttgccccacggaaaaggaaaaaccagattacttctcttgtagaggatgct
ctcaacaaatcaagctttgagaattatagttcaagagcacgtgattctcttgcatgttgg
atgcctgattgcataggattcaatcttattgaggcagttctatgccatatatgccgaaag
gaaagaccaggtgctgtgctagtatttatgactggttgggaagatatcagttctttgagg
gatcaacttaaagctcatcctcttttgggagaccctaacagggttctgcttctaacatgc
catggttctatggcaacatctgaacagaaattaatattcgagaaaccgcctcccaatata
cgtaaaattgttcttgctacaaatatggcagaggcaagcattacaatcaatgatatagtt
tttgtggtagattgtggaaaagcaaaagagaccacatatgatgctctgaataatacacca
tgtctgctaccttcctggatatctcaagcatcagcccggcaaagaaggggtagagctggt
cgtgtgcagccaggcgaatgctaccacctatatccgagatgtgtttatgaagctttctct
gagtatcaacttcctgaacttctgagaactcctttgaattctctctgcttgcaaataaaa
agtttgcaggttgaaagcattggaggattcttgtcagcagctttgcaagcaccagaacca
ttggctgtccaaaacgccattgattttctaaaaatggttggggcactagatgagaaggaa
aatctcactaatctaggaaagtttttggcaatgcttcctgtagatcccaagcttgggaaa
atgctaatcatgggtgccatcttccgttgctttgatcctgtattaacaatagtgtctgga
cttagtgtcagggatccttttcttttgcctcaagacaagaaggatttagctgggacagcc
aagtctagattttctgcgaaagactacagtgatcacatggctcttgtccgtgcttatgaa
ggctggaaggatgcagaaagagaaggatcagcatacgagtattgttggagaaacttcctg
tctgcacaaactcttcaggctattcattctcttaggaagcaatttggttatattctaaga
gaagctggcttggtagatgaagatgtagctgcaaacaataaattaagtcacaaccagtct
ctagttcgagctgtcatatgctccggactctttcctggaatagcatctgtagtgcacaga
gagacatcaatgtcttttaaaacaatggacgatggccaggttttgttatatgctaattct
gtgaatgcacggtaccaaacaataccttatccgtggctagtgtttggtgaaaaagtaaag
gtcaatacagttttcatacgtgactccactggcgtatcggattctatattaatgctcttt
ggtggctctctaagccgtggggcagaggttgggcatttgaaaatgttgcaagggtacatt
gatttcttcatggattctaccttggctgaatgctatttgaagctcaaagaagaacttgat
agacttattcagaagaagcttcaagatcctagtgttgatattctccaggaagggaagtac
cttatgcttgcagttcaagagctagtgtctggagatctatgtgaagggcgatttgttttt
ggccgtgcaagtaggaagcccaaggattctgctgacaacagtagattcacgagggatgga
acaaatccgaagagcttgctacaaactttgttaatgagggctgggcactcacctccaaaa
tacaagacgaagcatctaaagacaaatgaatttagggcactggtggaattcaaaggaatg
cagtttgtgggaaagcccatgaaaaacaagcagcttgctgagagggatgccgctgtagaa
gcattggcatggttgactcatacctctgacaatagtcgtggtgatgatggttcccctctt
gatgtcactgacaacatgttaaaacttttgggaaagcgtcgaagatcaaaaagacgatag
DBGET
integrated database retrieval system
