Gossypium arboreum (tree cotton): 108460507
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Entry
108460507 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108460507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108460507
03012 Translation factors [BR:
gab03012
]
108460507
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108460507
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108460507
Translation factors [BR:
gab03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108460507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
ATPase
AAA_19
Motif
Other DBs
NCBI-GeneID:
108460507
NCBI-ProteinID:
XP_017615511
LinkDB
All DBs
Position
4:41206247..41214782
Genome browser
AA seq
1034 aa
AA seq
DB search
MPVRLLSINNKLTSLLFNRPFPAPTPIFPFSPLQISSFAMSYRPNYQGGRRGGGPNSGRG
GGRRGGGGGGRGGRGGEQRWWDPAWRAERLRQKAAEMEVLDEAEWWDKMNQMEKGQEQEM
IIKRNFSRSDQQVLSDMAYELGLYFHAYNKGKALVVSKVPLPNYRVDLDEHHGSTQKQIQ
MSTETERRVGNLLDVSRDTKSGDDSGVASSRGTTKPLPDVKRIDSVSTIETDSSKEKFSA
ELKKKQENLNASNSVKAMLSFREKLPAFKVKAEFLKAVAQNQVLVVSGETGCGKTTQLPQ
FILEEEISSLRGANCNIICTQPRRISAISVAARISSERGENVGETVGYQIRLESKRSSQT
RLLFCTTGVLLRQLVQDPYLNGVSHLLVDEIHERGMNEDFLLIILLDLLPRRPDLRLILM
SATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDVLQKTRYNIKSEFDNNQGNSRRRRK
ELDFKKDNLTALYEDVDIDSEYKNYSASTRHSLEAWSGSQIDLGLVEATILYICRHEADG
AILVFLTGWDDISKLLDKIKVNSFLGDLSKFLVLPLHGSMPTINQQEIFDRPPPDKRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKLIHDAMLEYQLPEILRTPLQELCLHIKSLQLGSVGSFLAKALQPPDPLSVE
NAIELLKTIGALGDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIAAALAHR
DPFVLPINRKEEADAAKRSFAGDSCSDHIALVKAFEGYKDAKRNGRERAFCWENFLSPVT
LQMMEDMRNQFIDLLSDIGFVDKSRGASAYNQYSHDLEMVCAVLCAGLYPNVVQCKRRGK
RTAFYTKEVGKVDIHPASVNAGVHLFPFPYMVYSEKVKTTSIFVRDSTNISDYALLLFGG
NLIPSKTGEGIEMLGGYLHFSASKSVLDLIRKLRGELDKLLNRKFEEPGFDISVEGKGVV
SAVVELLHSQNVRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcgcttgcttagcattaataataagctcacttcgcttcttttcaatcgcccc
ttccccgcccctacgccgatctttcctttttctccactccagatttcatctttcgctatg
tcttatcgccctaactaccaaggtggccgtcgaggcgggggtcccaactccggccgcgga
ggtgggcgccgaggaggcggcggcggaggacgcggaggacgaggcggtgaacagcgctgg
tgggacccggcttggcgcgctgagcgtctccgtcaaaaggccgctgagatggaagttctg
gatgaggctgagtggtgggataagatgaatcaaatggaaaaaggacaggagcaagagatg
atcattaaacgaaatttcagccgttcagaccagcaagttctctctgatatggcttacgaa
ttaggtctttacttccatgcgtataataaagggaaggctcttgtggttagtaaagttcca
ttgccaaattatcgtgtagatcttgatgaacatcatggatcaacacaaaaacagattcaa
atgtctacagaaactgagaggcgagtgggaaatctcttggatgtctcaagggacacaaag
tcgggtgatgattcaggagtggcatctagtaggggaaccacaaaaccattgcctgatgta
aaaagaattgattcagtttctacaattgaaacagattcttccaaggaaaaattcagtgct
gaactcaagaaaaagcaggaaaacttgaacgcaagtaacagtgtgaaggcgatgctgtct
ttcagagaaaaactaccagcattcaaagtgaaagctgagtttctaaaagctgttgctcaa
aatcaggttctagtggtttcaggagaaacaggatgtggtaaaacaacacagcttcctcaa
tttattttagaagaggagatatcatctctgaggggtgctaattgtaacataatatgtact
cagccacgtcgcatatctgccatatctgttgcagcgagaatatcctcagaaaggggagag
aatgttggtgaaactgttggttatcagattcgcctagagtcaaagcgatcttctcagaca
cggctgttgttttgcacaactggagtgttactcagacagttggttcaggacccatattta
aatggcgtgagtcatttgctagtggatgaaattcatgaaagaggcatgaatgaggacttc
ctgttaataattttacttgaccttcttcctcggcgtccagacttgcgtcttattttgatg
agtgcaaccatcaatgctgatttgttctctaaatattttggaaatgctccaactattcac
ataccggggttgacctttccagtggctgagttatttctcgaggatgtgctgcagaaaact
cgttataatatcaaatcagaatttgacaataatcaaggcaattcgcgaaggaggaggaaa
gagcttgatttcaagaaagataatttaactgcactatatgaggatgttgacattgattct
gaatataagaattacagtgcatctacaagacattcacttgaagcgtggtcaggctcacag
attgatttgggtctggtggaggccacaattttgtatatttgccgccatgaagctgatgga
gctattcttgtattcctcacaggctgggatgacatttctaagctccttgacaagattaaa
gtgaacagctttcttggggatcttagcaagtttctggttcttcccttacatggttctatg
cctaccattaatcaacaagaaatatttgaccgtcctccacctgacaagcgaaaaattgtt
ttggcgacaaatattgctgaaagtagcatcaccatagatgatgttgtgtatgttatagac
tgtggaaaggcaaaggaaacaagttatgatgctcttaacaagctggcatgtcttttacct
tcatggatttcaaaggcttcagcacatcagagacgaggccgtgctggtcgtgtgcaacct
ggagtttgctataggctgtacccaaaattgatccatgatgcaatgcttgagtatcaatta
cctgaaattctccgaacaccattgcaagagctatgcctacatatcaaaagcttgcagctt
ggatccgtgggatcatttttggcaaaggcacttcagcctccagatcctctttctgttgaa
aatgcaattgagcttcttaaaacaattggagctttgggtgatgcagaggagcttactcct
cttggtcgtcatctttgcactctacctttggacccaaacataggaaagatgcttctaatg
ggggctatttttcaatgcctgaatcctgctttgacaattgcagctgctcttgctcatcgt
gacccatttgtccttccaataaataggaaagaggaagctgatgcagcaaaaagatccttt
gctggtgattcttgcagtgaccatatagcacttgttaaagcctttgaaggatataaagat
gcaaagcgtaatggaagagagagagcattttgttgggaaaattttctatccccagtgacc
ttgcagatgatggaggatatgagaaatcagtttatagatctgttatcagacataggcttt
gtagacaaatcacggggtgctagcgcttacaaccaatacagccatgatttggagatggta
tgtgcagtcctttgtgctgggctttacccaaatgttgtgcaatgcaaaagaagaggaaaa
cgtacagcattctacactaaagaagtcggaaaagttgacattcatcctgcatctgttaac
gcgggggttcatctctttccatttccttatatggtttacagtgaaaaggtcaaaacaacc
agcatttttgtccgagactcaacaaatatttctgattacgctttacttctgtttggtggt
aatcttattcctagcaaaacgggagagggtattgagatgcttggggggtaccttcatttt
tctgcgtcgaagagtgtactggacttgatacggaaactgcgtggggaacttgacaagctt
ttgaacagaaagtttgaagaacctggatttgatatatctgttgaaggaaagggagtagtg
tctgctgtggttgagttattgcacagccaaaatgtacggtactga
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