Gossypium arboreum (tree cotton): 108460536
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Entry
108460536 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108460536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108460536
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108460536
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108460536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
Ank_2
HA2_N
Ank_5
nSTAND3
AAA_19
ATPase
AAA_22
Ank_3
ResIII
AAA_11
Ank
Rad17
T2SSE
Ank_4
AAA_23
AAA_16
Motif
Other DBs
NCBI-GeneID:
108460536
NCBI-ProteinID:
XP_017615541
LinkDB
All DBs
Position
12:complement(80359408..80368952)
Genome browser
AA seq
1220 aa
AA seq
DB search
MGKKNPLAEISVIRLNNVLEKFRESEDEVYTFESNLTNKERALVHKACRKMGMKSKSKGR
GSQRCVSVYKIKEKASSMTEKNLTTVSFSEGTQLVLQDLFTNYPPDDGELGEKVFGKYSG
KSAKIRRKKDDIFSKPLMNAAEIAKKVKTLASKREKYPNMRQIDEERSKLPISGFRDAIT
SAVESHQIILISGETGCGKTTQVPQFLLDYMWGKGEACKILCTQPRRISATSVAERIANE
RGESVGENVGYKIRLESKGGRHSSIVFCTNGVLLRVLVANSRSKREDISDMTHIIMDEIH
ERDCFCDFMLAIIRDILPSYPYLRVVLMSATLDSERFSQYFGGCPIIRVPGFTYPVRSFY
LEDVLSILKSTDDNHLISANASAQDEDPELTEEDKIALDEAINLAWSSDDFDPLLDLISV
EGGSKIHNYQHSLTGLTPLMVFAGKGRVEEVCMLLSFGVDCSIISKDGKSALDWAEQENQ
QEAAEIIKNHIESSQNNIGGQNLLEKYIASGNPEIIDFVLIEQLLRKICIDSNEGAILVF
LPGWEDINRMKEKLFANPFFKDSSRFIIVPLHSMVPSADQKKVFNRPPLGCRKIVLSTNV
AESSITIDDVVYVIDSGRMKEKNYDPYNNVSTLQSSWVSKANAKQREGRAGRCQPGICYH
LFSKLRAASMLDFQVPEIKRMPIEELCLQVKLLDPACKVEDFLRKTLDPPVSETVHNALR
VLQDIGAFTQDEELTELGEKLGYLPVHPLTCRMLFFAILMNCLDPALTLACASDFKDPFV
LPMRPNEKQKAAAARHELASLYGGQSDQLALIAAFECWKNAKRKGLEGRFCSQYFVSSST
MNLLFGMRKQLQGELIRHGFIPDDVSSCSLNANHPGVLHAVLVAGLYPMVGRILPVKQGK
RLIIEAANGSKVRLHTRSVNSKLVPKKPEDCPLIMYDEITRGDGGMFIRNCTVVGPFPLL
FLATEIAVAPIKGIVYDEDEDDGDDGDGDDDDGSDDGDGDACNTDGDEKLVVSKSGGKED
KVMSSPDNSVMVVVDRWLSFRSTALDVAQIYCLRERLLAAILFKVMHPHEVLPPVLGASV
YAIACILSYDGLSGIPTPAESVDSLTSRVRSTDINKSMPVMKDTSPNPSRFLLSLLNRSP
FSWSSFQKGVKGPAVGAVTNGVESMSYNQQAPVMSAGMSLDQAELQDPTSVASGSGVSKS
QGSGNGSCKRQRGKRSISRP
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaaccccttagctgaaatctccgttatccgattaaacaacgtacttgag
aaatttcgtgaatcagaagatgaagtgtatacctttgaatccaaccttactaacaaagaa
cgagcattggtgcacaaggcatgccggaaaatgggtatgaaatccaaaagtaaagggcgt
gggagccagagatgtgtatctgtctataaaatcaaagagaaagccagcagtatgacagag
aagaatctaactactgtgtcattttcggaggggacacaattggttttgcaggacttattt
acaaattatccaccagatgatggagagcttggagagaaggtatttggaaagtatagcgga
aaatctgctaaaatacgaagaaagaaagatgatattttctcgaagccattgatgaatgct
gcggagatagcaaagaaggttaaaacacttgcatctaagagagagaagtatccaaacatg
agacagattgatgaagagaggtcaaagcttccaatttctgggtttagggatgccattaca
tctgcagtagaatctcaccagattatcctcatttctggcgagactgggtgtggcaagaca
acacaggttccacaatttcttttagactatatgtgggggaaaggtgaggcctgtaaaata
ctgtgtactcagcctcggcgtatatcagctacatcagtggctgagagaatcgctaatgaa
agaggggaaagtgttggagaaaatgttggatacaagattcgcttggaaagtaaaggcggt
cgacactcatcaatcgtcttctgcacgaatggggtattattgagagtgctggttgcaaac
agtagatcaaagagggaagacatctctgacatgactcacattattatggatgaaattcat
gaaagggactgcttctgcgatttcatgttggcaattatcagggatatacttccttcgtac
ccttatctacgggtggtactgatgagtgctactcttgattctgaacggttttcacaatat
tttggtggttgcccaattatccgtgttcctgggtttacatatcctgtaagaagtttctat
ttagaggatgtgctttctatcctgaaatccacagacgataatcatcttatttcagctaat
gcaagtgcccaggatgaagacccagaattaactgaagaagataagatcgcattggatgaa
gctattaatttggcttggtcaagtgatgactttgatccacttttagatttgatttctgtt
gaaggagggtcaaagattcataattaccagcattctttgactggactaacgccactaatg
gtgtttgctggaaagggtagagtggaggaagtttgcatgctcctctcgtttggtgtagac
tgcagtataatctccaaggacgggaagagtgctttggattgggctgagcaggaaaaccag
caggaagctgctgaaataattaaaaatcatattgaaagttcccaaaataatattggggga
cagaacttactcgaaaagtatatagcatcaggtaatccagaaatcattgattttgttctt
attgaacaattactaagaaagatatgtattgattcaaatgaaggagccatccttgttttc
cttcctgggtgggaggatataaacagaatgaaagagaaattattcgccaacccctttttt
aaagattcttccagatttattatagtacctttgcattcaatggttccatctgctgatcaa
aagaaggtctttaatcgtccacctttgggctgccgcaaaatcgttctttcaaccaatgtt
gctgaaagttccattacaatcgatgatgttgtctatgttatagatagtggtagaatgaaa
gagaaaaactatgatccatataataatgtatcaacccttcagtcttcatgggtctccaaa
gcaaatgctaagcagagagaggggcgagctggtcgatgtcaacctggaatttgttatcat
cttttttcaaaacttcgagcagcttctatgcttgactttcaagttccagagattaagaga
atgccaattgaagagctctgtttacaggtgaaattgcttgacccagcttgcaaagtagag
gatttcttgcgaaagacattggaccctcctgtttctgaaactgtacataatgcacttaga
gtccttcaagatattggggctttcacgcaagatgaggaactgacagaacttggagagaag
cttggttatcttcctgttcatccattgacatgcaggatgcttttctttgccatattgatg
aattgccttgatccggcattgacactagcatgtgcttcagacttcaaggatccatttgtc
cttcccatgcgaccaaatgaaaagcagaaggctgctgctgccaggcatgagcttgcgtct
ctgtatggtgggcaaagtgatcagctggcactcatagctgcctttgagtgctggaagaat
gctaaaagaaagggtctagagggacgtttttgttcacaatactttgtctcatcaagcacc
atgaacttgctgtttggcatgcgtaagcagctccagggtgaactaatacggcatgggttt
attccagatgatgtctcaagctgtagtctaaatgcaaatcaccctggagtactccatgca
gtccttgtggctggtttgtatccaatggtgggaaggatactccctgtaaaacagggtaaa
cgattgattatagaggctgccaatggcagtaaagttcggttacacactcgctctgttaat
tcaaagttagtacccaagaaacccgaagattgccctttgattatgtatgatgaaataacc
cgtggggatgggggtatgttcataaggaactgtactgttgttgggccatttccattgtta
tttcttgcaacagagattgcagtggctcctataaaaggcattgtttatgatgaagatgaa
gatgatggggatgatggtgatggtgatgatgatgatggaagtgatgatggtgatggtgat
gcatgcaacactgatggagatgaaaaattggttgttagtaagtcaggtggaaaagaagat
aaggtcatgtcctctcccgataattctgttatggtggttgttgatcgctggctatcattc
agatcaacagcacttgatgttgctcaaatttactgcttgagagaacgattattggcagca
atcttattcaaggtaatgcatccacacgaagttcttcctcctgttctcggggcgtctgta
tatgcaatagcttgtattctatcttatgatgggttatcaggcatcccaacgccagcagaa
tctgtagattcactgacttcgagggtgcgttctactgatatcaacaaatctatgccagtg
atgaaagatacaagtcccaatccaagtagattccttttgtcacttttgaaccgaagccca
ttcagctggtcaagtttccagaaaggtgttaagggccctgcagtaggggctgtaacaaat
ggagttgagtccatgagttacaaccaacaggcacctgtaatgtcagctgggatgagctta
gatcaagctgagttgcaggaccctacgtcagttgcttccggttcaggtgtgtctaaatca
cagggttctggaaacggttcttgcaagcgacaacgcgggaagaggtctatatctagaccg
tga
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