Gossypium arboreum (tree cotton): 108460565
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Entry
108460565 CDS
T05776
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108460565
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108460565
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108460565
NCBI-ProteinID:
XP_017615582
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Position
10:906925..910233
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AA seq
385 aa
AA seq
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MASLSCLVLLSFIFSNFAHSLAGYYTSKLLAYNVPKKPMNVIDSCWRTKSDWAVNRKALA
NCVVGYGKATLGGKYGAIYVVTSPYDDPVNPKPGTLRYGVIQSVPLWIVFARDMVIKLKN
ELIVNSFKTIDGRGAKVEIAYGPCITIQGVTNVIIHGISIHDCKPGMVGQVRSSPTHVGV
RGGSDGDAISVFASSNIWIDHCYLARAKDGLIDVIHASTGVTISNNYFTQHDKVMLLGHN
DKFIADKVMKITLVFNHFGEGLIERMPRVRIGYAHVANNKYDEWKMYAIGGSANPTIFSE
GNYFVAPDNRSPKQVTKREATNWQNWKWQSSKDVFINGAYFVPSGYGSAAPLYTRAQSFT
VAPGYMVPVLTSNAGPLRCLVGKPC
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcttccctttcatgtcttgtattgctttcatttattttctcaaattttgctcattca
ctagcaggttattacacctctaaactacttgcatacaatgtccctaagaaacccatgaat
gtaatagactcctgctggcgaaccaagtccgattgggccgtcaatcgcaaagccttggcc
aactgtgtggtcggctacggtaaagcaactctaggagggaaatacggagcgatttacgta
gttacgagcccttatgatgatcccgtcaaccctaaacccggcacgcttcgttatggtgtt
attcaatccgttcctctttggatcgtttttgctcgagatatggtcatcaaactgaaaaac
gaattgatagtgaatagttttaaaaccattgatggtagaggggctaaagttgagattgca
tatggaccttgcataacaattcaaggtgttaccaatgttataatacatggtattagcatt
catgattgtaaacctgggatggtcggtcaggttaggagttccccgacacatgtaggggtg
cgcggagggtctgatggggatgcaatcagcgttttcgcgtcttcaaacatttggatcgat
cattgttatctcgcacgggctaaagatggtcttattgatgtgattcatgcttcaactggc
gtcacgatctctaataactatttcactcaacacgataaagtaatgttattaggacacaac
gacaagttcattgcagacaaagtcatgaaaattacattagtttttaaccatttcggtgag
ggacttatcgagaggatgccgagggtcaggataggctatgcacatgttgctaacaacaaa
tacgacgagtggaagatgtacgccatcggtggcagtgcaaatccaaccattttcagcgaa
ggaaactacttcgtagcgcccgataatcgtagtcccaagcaagttacgaaaagagaagca
acaaattggcaaaactggaaatggcaatcgtcaaaggatgtgtttataaatggtgcatat
tttgtaccatccggctatggtagcgctgctcctctctatactcgagctcaatcgttcact
gttgctccaggatacatggtcccagttttaacatcaaacgccggtcctttacgttgtctt
gtcgggaaaccgtgctga
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