Gossypium arboreum (tree cotton): 108460638
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Entry
108460638 CDS
T05776
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108460638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108460638
03036 Chromosome and associated proteins [BR:
gab03036
]
108460638
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108460638
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108460638
PBAF complex
108460638
GBAF(ncBAF) complex
108460638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
108460638
NCBI-ProteinID:
XP_017615694
LinkDB
All DBs
Position
4:118934933..118940517
Genome browser
AA seq
1016 aa
AA seq
DB search
MEEKRRDAVNSPAEPELASTRRRGGALKRKVNSLSGSSSSSTPSKRVTREKSNLISHSPV
NHYGPLTRARQGAPSGNLALGSSSGSGGAKLQETNLVKQSVKAEDLEELKASEELEALEA
KIEADFEAIRSRDSNAHVVPNHCGWFSWNKIHHLEESILPSFFNGKSPNRTPAAYMEIRN
WIVKKFHANPSKQIELKDLEDLEVGDLDARQEVLEFLDYWGLINFHPFPLAGSAVPNPNG
DGDGDGDGMTEKDSLLEKLFHFDEIESRPQVVTKPNLSSPSLPSGLLPESAVAEDLMNPE
GPSVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGTFGSGMSSSDFILMEPADPGLS
GGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDVFFNCDDNNID
TNSKETAGPAAMNDETTVAKDVSETTESKTTQEDQAKTTPMETSKPEDEKEVGGSEEPSE
TKTGTDVKGVKETLKPEEMNVPKDGLEATENCALTALREAFEAVGYNLTSESKLSFADVG
NPVMALAGFFAHLVGPNFAAASAQSSLKSLSGTCPNIQLAARNCFVLEDPPDEKEPTCSK
SVANDTGNRGAQNVKHSEDESLKGDQKISMSNHGDENTEVSLREENATSPSPNDLTMDKK
ESSNFATNEEDKKANLNESSIINQSKDHQPSVTRVSNNITSQVLPSTLEETGGKGTAKEP
SQPPKAVKEVDMSDSVQLKKNEPCDAAASKPVGELSEPADASENLETASCSPSRSKNEQK
TVKPSPDGESTEPAEASNDVQMVSVAQPSERREPPQPVSSNSVNENGVMTDKIEEGKSKN
HDSTETEDNSSIDKLKRAAVTALSAAAVKAKLLADQEEDQIRQLTTSLIEKQLHKMEAKL
SFFNEMEGVVMRVKEQLDRSRQRLYHERTQIIAARLGLPASSSRAMPPPNAANRVATNFA
NSVARPPMSMKAPRPPLSRPMGSMTPTPSNPYVSTTVAGSSIRPGSQDNLSSVGTK
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaacgccgggatgcggttaactccccggcggagccggagctggcatcaact
cgccgtcggggtggagcgctgaagagaaaagttaattcgctttccgggtctagttcttca
tcaactccgtcgaaacgggttactcgggagaagtcaaacttgatctcccactctcccgtt
aaccattacggtccgttaaccagggctcgccaaggggcgcctagtggaaacctagccttg
ggttcgagttcgggatcgggtggcgcgaagcttcaggagacgaatttggtgaagcaaagt
gtaaaggcggaagatttggaagaattaaaggcaagtgaagagttggaggctttggaagct
aagattgaggctgattttgaggctattaggtctcgtgatagtaatgcgcatgttgttccc
aatcattgcggatggttttcatggaataaaattcaccatctggaagagagtatcttgcct
tctttctttaatgggaaatccccaaatcgtacccccgctgcatacatggagattcgcaat
tggattgtgaagaaatttcatgcaaatccaagcaagcagattgagttgaaagatctggaa
gatcttgaagtcggtgacttggatgcaaggcaggaggtattggagttcctggactactgg
ggtttgattaattttcatccatttcctctggctggttctgctgtgcctaatcccaatggg
gatggggatggggatggagatgggatgacagaaaaggattctttgcttgaaaaattgttt
cactttgacgaaattgaatcacgcccacaagttgttaccaagcctaacctttcaagccca
tctctaccatctgggctacttccagaatctgcggttgctgaggacttgatgaatccggag
gggccatctgttgagtaccattgcaactcttgttcagctgattgctctaggaaacgctac
cattgccagaagcaggcagattttgacttatgtactgattgctttaacaatgggacattc
ggttctggcatgtcttcatcggattttattctcatggaacctgctgaccctggtcttagt
ggtggcaagtggacagatcaggaaaccctcctccttcttgaggcacttgaactttataaa
gaaaactggaatgagattgcagagcatgttgctacgaaaacaaaagcacaatgcatactg
catttcgttcaaatgccaattgaggatgtattttttaattgtgatgataataacatagac
acgaattcaaaagaaactgctggcccagctgccatgaatgatgaaacaactgtcgctaaa
gatgtctcggaaacaacagagagtaagactactcaagaagatcaggccaagactacgccg
atggaaacttcaaaacctgaagatgaaaaagaagtcgggggtagtgaggaaccatcagaa
accaaaactggaactgatgtaaaaggtgttaaagaaacattaaagccagaagaaatgaat
gtaccaaaagatggactagaagcaactgaaaattgtgcccttacggcactaagggaggca
tttgaagctgttggttataatttaacatccgaaagcaaactttcatttgctgatgtagga
aatcctgtcatggcactggcaggattctttgctcatctggttggacccaactttgctgct
gcttcagcccagagttcacttaaatcattatctggtacttgtccaaacattcaactggct
gccaggaattgctttgttttggaagatccaccagatgagaaggaaccaacatgttctaag
agtgtcgccaatgatacgggtaatcggggtgctcagaatgtgaaacactcggaagacgaa
agcctcaagggggatcagaaaatttcaatgagcaaccatggtgacgaaaacactgaagtt
tctcttcgtgaagagaatgcgacatcaccttcacccaatgacctaaccatggataaaaaa
gagtcaagcaattttgccactaatgaggaagataaaaaagctaatttgaatgaatccagc
attattaatcaatcaaaggatcatcaaccaagtgtaacaagggtatcaaataacataaca
tcccaggttctaccaagtactctagaggagacaggtgggaagggaacagctaaagaacct
tctcagcctccaaaagcagtgaaggaagtagatatgtctgattctgttcaactgaaaaag
aatgagccttgtgatgctgctgcatcaaagccagtgggagagctatctgaaccagcagat
gcatcagaaaatctagagacagcttcctgctctccatccagatcaaagaatgagcaaaaa
actgttaaaccaagccctgatggggaatctacggagcctgcagaggcatcaaatgatgtt
caaatggtgtctgttgcacaaccatctgaaaggagggaacctccacagccagtctcatcg
aattcagtaaatgaaaatggagtaatgacagacaagatcgaagaaggtaaaagcaagaac
catgactctacagagacagaagataacagtagcattgataaattaaagcgagctgcagtt
acagcactctcagcagcagcagtgaaggcaaaacttctagcagaccaggaagaggaccaa
atccgacaacttaccacatcattaatagaaaagcagttacataagatggaagccaaatta
tctttcttcaatgagatggagggagtcgtaatgagggtgaaggagcaattggacaggtca
aggcaaaggctttaccatgagcgaacacagataattgctgctcgactgggcttaccagct
tcctcctctagagcaatgccgccaccaaatgctgcaaatagagttgcaacaaactttgca
aactcggttgcaaggcctccaatgagcatgaaagccccaagaccaccattgtcgagaccc
atgggttctatgacccctaccccttccaacccatatgtgtccactacagttgcagggagt
tcaattcgacctggtagccaagacaatctttcctccgttggaaccaagtag
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