Gossypium arboreum (tree cotton): 108461014
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Entry
108461014 CDS
T05776
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
108461014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108461014
03029 Mitochondrial biogenesis [BR:
gab03029
]
108461014
Membrane trafficking [BR:
gab04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
108461014
Mitochondrial biogenesis [BR:
gab03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108461014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_WDHD1_1st
WD40
Beta-prop_Vps41
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
WD40_MABP1-WDR62_1st
Beta-prop_RSE1_2nd
WDR55
BCAS3_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
WDR54
EIF3I
DUF2415
Beta-prop_IFT140_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
108461014
NCBI-ProteinID:
XP_017616261
LinkDB
All DBs
Position
4:43341369..43349112
Genome browser
AA seq
372 aa
AA seq
DB search
MANQSSPYPILCASFNQDNSGFAISTKDGFKIIDSNTGRLCYDRAVGAFIIVEMLYSSSL
LAIVGAGEQPSLSPRRLCLFNTTTGAPLREMNFLTSILAVRLNRKRLVVVLQEKTYIYDS
NSLSMLDTIDTVPNLKGLCAFSPSLEGCFLALPASTAKGAVLVYNVMELQLHCEIDAHRS
PLAAIALSSNGKYIATASEQGTIIRIHLVSEATKSYSFRRGTCSSTIFSLSFAPSLQLPD
ILVATSSSGSVHIFSLGFETNQRTKKSGSFLGSILPYSVNDGLDPAHHHVLHNAVSAGVR
SYAVVRKVDKVADSSSSEIASCRNMPSLSTARTSLHGAWSVNSTLWQSFQVMQKPHDTFN
GRTSIKRSCCNT
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcagtcctctccttacccaatcctctgcgcttccttcaatcaagacaacagt
ggttttgcaataagcactaaagatggcttcaaaattatcgattcaaacaccggaaggctc
tgctacgatcgtgctgttggagcttttattattgttgaaatgctgtatagttcaagtctt
ctcgccattgtcggagccggtgaacagccatctttatctccacgccgtctctgtttgttc
aatacaacaactggtgctcctctccgagaaatgaatttcctgacttcaattcttgctgtt
cgcttaaataggaaaaggcttgttgtggttttgcaagagaaaacatacatatatgactca
aacagtctttcaatgttggataccattgatactgtgccaaatttaaaaggactttgtgca
ttctcccctagtttggagggttgcttcttggctcttcctgccagcacggccaaaggagct
gtattagtgtacaatgtcatggagcttcagttgcattgtgagatagatgctcaccggtct
cctttggctgcaattgcattatcttccaatgggaaatacattgcaacagcatctgaacag
ggaactataatcagaattcatttggtttcagaagcaactaagtcatacagtttccggagg
ggaacatgctcgtcaaccatattttcattgtcatttgcaccatcattgcaacttccagat
attcttgtggccacaagctcttctggttctgttcatatcttctctctggggtttgagaca
aatcagaggaccaaaaagtcaggtagttttcttggatcaatattaccttattctgtgaat
gatggactagatccagctcaccatcatgtgcttcacaatgctgtttctgcgggagtcaga
agctatgcagtggtacggaaggtagacaaagttgctgattcatcctcatctgagattgca
tcttgtaggaatatgccttcactctcaacagccagaacgagtctacatggagcctggagc
gtgaattcaaccttgtggcagtcatttcaggtaatgcagaaacctcatgacacctttaat
ggtcgaacctcaatcaaaaggagttgttgtaatacttag
DBGET
integrated database retrieval system
