Gossypium arboreum (tree cotton): 108461538
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Entry
108461538 CDS
T05776
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108461538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108461538
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108461538
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
108461538
NCBI-ProteinID:
XP_017616895
UniProt:
A0A0B0P9J7
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Position
9:82683741..82687335
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AA seq
200 aa
AA seq
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MVSSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGESVAIWW
RPNFETMMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMISI
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtatcgtcacctgtcgtgaacacgtatcctctgtccagctacaccttcggcaccaaa
gagccgaagatggagaaggacacgtccgttgccgatcgccttgctcgcatgaaagtcaat
tatatgaaagagggcatgagaacaagtgttgaagcgattttactggtccaagaacataat
catcctcacattcttcttctgcaaattgggaacacattctgcaaacttcctggtggacgc
ctgaagcctggagaaaatgagattgagggtctgaagaggaagctgaccagcaagcttgga
gctaattcacctgctcttgtgccagactggcagattggtgagtctgtggccatctggtgg
aggcccaattttgagacaatgatgtatccatattgccctccccacattacaaaacccaag
gagtgcaagaagcttttcctcgtccacttgtctgagaaagagtactttgcagtaccgaag
aatctgaaacttcttgctgtaccattgtttgagctctacgataatgtgcagagatatggg
ccagtcatatcaaccattcctcagcagctttctagattccagttcaacatgatcagtata
tga
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