Gossypium arboreum (tree cotton): 108461781
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Entry
108461781 CDS
T05776
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108461781
03015 mRNA surveillance pathway
108461781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108461781
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108461781
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_ACIN1
RRM_10
RRM_3
RBD_AKAP-17A
Motif
Other DBs
NCBI-GeneID:
108461781
NCBI-ProteinID:
XP_017617203
LinkDB
All DBs
Position
13:complement(115627879..115633062)
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AA seq
419 aa
AA seq
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MAKPTTRGRRSPSISGSSSRSRSRSKSRSRSYSGSDSKSSSRSRSVSRSRSASPSSSRSR
SSFSSSPSRSGRSRSRSPPKRRSPVPGSRRGNSPPPQSKKSSPAPRKASPIRESLVLYVD
SLSRNVNEGHLREIFSNFGEVVNVDLAMDRILNLPRGYGYVEFKTRADAEKALLYMDGAQ
IDGNVVRAKFTLPPRPKVSPPPKPISSAAKGDVPKSDNASADIERGGPKRPRESSPQRKS
LPSPRQRSPVGRRGGSPRRPPESPRRRVDSPVRRNGETPPRRRPASPVRGRSPLSPPRRL
RSPPRASPRRMRSPIRRRSPPPRRRSPPRRARSPPRRSPLGRRRSRSPIRRPARSRSRSF
SPRRGKGPAARRGRSSSYSRSPSPWKVPRRISRSRSPRRPLRGRSSSNSSSNSSPPRKP
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccgacgacgagaggccgtcgctcaccttctatctccggctcctcttcccgt
tctcggtcacggtccaagtctcgttcccgctcttattccggctccgactcaaagtctagt
tcccgttctcgctctgtgtccaggtcgagatccgcttctccttctagctctcgctccaga
tcttccttctcttcttctccttctcgtagcggtcgctctcgaagtcgcagccctcctaag
cgccgaagtcctgtgcctggatctaggcgaggtaattcccctccaccacaatctaaaaag
tcatctccagccccaaggaaggcttctcccatccgtgagtctctggttctctatgttgac
tcactgagcaggaatgtcaatgaaggccatctaagagaaatattcagtaattttggtgaa
gttgtaaatgtggatctagccatggaccgtattcttaatcttccgcgaggatatggctat
gttgaattcaagacaagagcagatgctgaaaaagctctactttacatggatggtgctcag
attgatggcaatgttgtaagagcgaagtttacacttcctccacgaccaaaagtttcacca
cctccaaagccaatttcttctgctgctaaaggagatgttcctaaatctgataatgccagt
gctgatattgagaggggtgggccaaagcgaccacgggagtcttcacctcaacggaaatcc
ctgccctcacctagacagagatcacctgttggtcgaagaggtggatctcccagacgacca
ccagagtctccacgtcgtcgagtagattctcctgttcgtcgtaatggtgaaacacctccc
aggcgccgccctgcatctcctgtcagaggtcgttctccgttgtctcctccaaggcggctt
agatctcccccaagggcatctcctcgcaggatgcgtagtccaatccgaagacgttctcct
cctccaaggcgccgttcacctcctagacgtgcacgtagtcctccaagaaggtctcctcta
ggtcgtagacggagccgttctccaattcgtagacctgctcgttctcgttcaaggtcattc
tcacctcgtagaggtaaaggaccagcagcgagacgtgggaggtcatcatcctattccaga
tcacctagcccctggaaggtaccgaggaggatttctaggagccgcagtcctagaaggcca
ttgaggggaagaagcagcagcaacagcagtagcaatagttctccgcctcgtaagccgtaa
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