Gossypium arboreum (tree cotton): 108462471
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Entry
108462471 CDS
T05776
Name
(RefSeq) endoribonuclease Dicer homolog 3-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108462471
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108462471
microRNA pathway
RISC loading complex
108462471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
DND1_DSRM
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
108462471
NCBI-ProteinID:
XP_052880571
LinkDB
All DBs
Position
13:124166196..124179748
Genome browser
AA seq
1620 aa
AA seq
DB search
MVSINDDHAKNHHPSSSSNPDHSSPRGFALFFLFFFYFFPFIFSVFVNFSFFSVCCRHQL
QVYEVAKRRNIIAVLDTSGGKTMIAVMLIKDFVQPINSIDKKKLIIFLAPTVHLVNQVYF
FLFFLESLNLDVEQYYGDKGVNEWNSEYWEKDIKEHDVLVMTPQILLDALWKAFLSLEMV
SLMIIDECHHATGNHPYVKIMKEFYHKLNNKPKIFGMTASPVVSKGALSNNDYEDQISEL
ENVMDCTIYTIEDMTEMETYVPTAKKSCRFFDPTRFYSSGLKAMIEASWLKMDALLSTLQ
GSIHTSYTDMDDKFQALHKRSSNDHAKILHCFDDLGLICAYEAVKVCLENIPDTKEENEA
HRVGVLQCKRFLNEVLQIIGESLPLGDENFLNSGFDYLKAVDSGYISPKLHELIELLLSL
GEPSQVLCLVFVERIVTAKVIERFVKKVSCLSCFVVSCLTGSNTSVDSMAPKIQKETLES
CQSGKVNLLFATDVVDEGIHIPNCSCVIRFDLPKTVWSYVQSRGRARQSGSQFIMMLERG
NEKQRDQLYDIIRSEHSVTNTAMNRDPDISLPENRTLEEANVSIVAATGASVTEASIEET
SKNRCASKGKDPIFDSGLGTTRRKELHGTTQIRALSGSWGEKADASVFFAYKIDFSCNVV
SDVYSESVLLIESKLADDVGNIEVDLYLIGKIAKARVSFYGKVHLDAVQITAAKRFQEIF
FNGLFGRLFVGSSGTSRELLFHSKTSLLWHPSNMYLLLPLEDSLSNELRINWPGITACTF
AVEFLTADGNRGNPSLNQTDSSVTEHKETNVIHFANRSIDVNNISNIVVLAIHTGRIYST
IELVHDTSAKSSFNDIADLNSSKLATFSEYYNRKYRIVLKHPGQPLLLLKQSHNPHNLLV
DFNDEDFSAQALQASSVNEKSWNNIHMPPELLLVLDVPIYVLKAFYLLPSLMHRLESLML
ASQLREEIDFHSSNFDIPSSLILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLFLRD
PEKHEGELSMIRSLALSNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLRLRSFPCNCR
VDSREVPLDKKFQTEDLEIKVSISCDRGHRWMCSKTISDCVEALIGAYYVSGGLIAALHM
MKWLGIDAELDPSLVAEVINRASLQSYVPNDEIQIIESKIGYKFSMKFFLQEALTHASAN
EFYCYQRLEFLGDSVLDLLITRYLYCNHTDIDSGELTDLRSASVSNETFAQVAVRNDLHK
HLRHCSPLLLDQISEYARSFPESWDTTRSVPGIKGPKALGELIESIVTAILIDTNLNLDE
VWRIVEPLLSPIVTPDKLELPPLQELNELCDSLGYFIREKCVNTGEMVHAKLWLQLDDIL
LVGEAFNRSKKVAKGKAALYLLKELEDRGISRKRTKQGHAGSSGTTDDGLLEPKMCKKQK
IAEIPSPTNDSSRTAYGVEIPSPANDSSRTAYGFSSDALVIARINTNKGQPRATLYETCR
KQLWPRPTFETTEERSRSPMEIGKGADRKIGFNSFVTKITLNVPSSGIIECTGDVRADKK
SSWDSAAILMLYSLKELGKLIIRESYFRDIKNGVVSSGSHRPLPYNNKIIFFNLDNHIYF
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggtttcaatcaatgacgatcatgctaagaaccaccacccttcttcatcttcaaatcct
gatcactctagcccaagagggtttgcccttttcttcctctttttcttttatttttttccc
tttattttttcagtttttgttaatttttcttttttctctgtgtgttgtaggcatcagctg
caagtatatgaagttgcaaagagaagaaatatcatagcagtgctagatacaagtggaggg
aagacaatgatagctgtaatgcttatcaaagattttgttcaacctatcaactccattgat
aaaaaaaagttgattattttcttggcccccactgttcatcttgttaatcaggtttacttc
tttttgtttttcctggaaagtttaaatttggatgttgaacaatattatggagataaaggg
gttaatgaatggaactcagagtattgggagaaagacataaaggagcatgatgttcttgtt
atgacaccccaaattctgttggatgccttgtggaaagcattcttgagtttagagatggtg
tccttaatgataatcgacgagtgccaccatgctaccggtaaccatccgtacgtgaaaata
atgaaggaattctatcacaaattgaacaacaaaccgaagattttcgggatgacggcatcg
cccgtagttagcaaaggtgcattatccaacaatgattatgaggatcaaatttcagaactt
gaaaatgttatggattgcactatatatacaattgaagatatgacagagatggaaacatat
gttcctacagcaaaaaaaagttgtaggtttttcgatccaacacgattttatagttcgggt
ttgaaagcaatgatcgaagcctcatggttaaagatggatgctttattgtcaacgttgcaa
ggctcgattcatacttcttatacagatatggatgataagtttcaggccctccataaacgg
tcatccaatgaccatgctaagattctgcattgtttcgacgatcttggtctcatatgtgct
tatgaggctgttaaagtctgtcttgagaacatccctgatacaaaagaggagaatgaagca
catagagtaggtgtattgcagtgtaaaaggttcctcaacgaagtgctacagataatcggg
gaatcccttcccctcggtgatgaaaattttctgaattccgggtttgactacttaaaggcg
gtagattcaggctatatatctccgaaactgcatgaactaattgaacttttattatcactc
ggagaacctagtcaagtattgtgcctcgtttttgttgaaagaattgttaccgctaaagta
atcgaaagatttgtgaagaaagtaagttgtttatcgtgttttgtggtttcgtgtttgact
ggaagtaatacgtcagttgattccatggcaccaaagatccaaaaggaaactttggagtca
tgtcaatccgggaaggtgaatctattatttgctaccgatgtggtcgacgagggaattcat
ataccaaactgttcatgtgtgatacgttttgacttgccgaaaacagtgtggagttatgta
caatctcgaggaagagctaggcaaagtggttcccaattcatcatgatgctagagagggga
aatgagaaacaaagagatcaactatatgatataattcggagtgaacattcagtgacgaat
acagctatgaatagagatcctgatatatctctcccggaaaaccgtacattggaagaagca
aatgtttctatcgtggctgctactggagcttctgttactgaagcttccattgaagaaact
tccaaaaatcgttgtgcttctaaaggaaaagatcccattttcgattcaggtctaggaact
acaagacggaaggagctgcacggaacaactcagattcgtgcattatccgggagctgggga
gaaaaagccgatgcttcggttttctttgcctataaaattgacttttcatgcaatgttgtt
agcgatgtttactccgaatctgttcttctaattgaatcgaagcttgctgatgatgtgggg
aacattgaagtagatctttacttgatcggaaagatagctaaggctcgtgtttctttttat
gggaaagtacatttggatgctgtacagattacggcagcaaagcgttttcaggaaattttc
tttaatggcttgttcgggaggctgtttgttggatcatccggaacatcaagggaactttta
tttcatagtaaaacgagcttgttgtggcatccatcgaacatgtatttgcttctgccccta
gaggatagtttgagtaatgaactgagaataaactggcctgggataacagcttgtacattt
gctgtagagtttttaactgctgacggtaacagaggtaatccgtcattgaaccaaactgat
tcatccgtgacagaacacaaggagaccaatgtaatccactttgctaacagatctatagat
gttaacaatatcagcaacatcgtagtattggcaattcataccggaagaatctattccacc
attgaattagttcatgatacatccgccaaaagttctttcaatgacattgctgatttgaac
tcatcgaagttagcgaccttctccgaatattacaacagaaagtaccgcatcgtgctgaaa
catccaggacaacctttattgctgttaaagcagagtcataacccgcacaacttgctggtt
gattttaacgatgaagatttttcagcacaagcattacaagcaagctcggttaatgaaaag
tcatggaataatatccacatgccacctgagcttttgctcgtccttgatgtcccgatctat
gttctaaaagccttttacttactaccatcattgatgcaccggctcgagtccttaatgttg
gctagccaacttagggaagagattgattttcattcaagcaacttcgatataccgagctca
ttgatcctggaagcgttaacaacgcttagatgttgtgaaagcttttcgatggagaggctg
gaattgctcggggattcagttctgaagtatgctgtgagctgccacctctttcttagagat
cccgagaaacatgaaggagaattatcaatgatacgttcattggcactgagtaactcgacg
ctgcataagctgggaactgaccgcaaattacagggttacattagagacagtgcttttgac
ccccgacgttgggtagctccaggacaactacgtcttcggtcttttccttgtaactgcagg
gtggactctcgagaagttcctttagataaaaagtttcagactgaagacctggaaattaag
gtcagtatatcttgtgatagaggccaccgatggatgtgttcgaaaaccatatcagattgt
gttgaagctctcataggagcatactatgtaagtggtggactcattgctgctcttcatatg
atgaaatggctcgggatcgatgctgaacttgatccctctttggtagctgaagtcattaat
cgtgcatccctacaatcttatgtccctaatgatgaaatccagattatagaatcgaaaatt
ggatacaaattttctatgaagtttttcttacaggaggccttgacacatgcatcggcgaac
gagttttactgttaccagaggcttgaatttcttggtgattccgtgttggacttgctgata
acccgatatctctactgcaatcacaccgatatagattcaggagaattgactgacctccga
tcggcttcagttagtaacgaaacttttgctcaagttgctgtccgtaatgaccttcataag
catcttcgacattgttcacctttactattggaccaaataagtgaatatgcacggtccttc
cctgaatcttgggacactacacgatcagtacccggcataaaaggtccaaaggctcttgga
gaacttattgaaagtatcgtcacggcaatcttgatcgatacaaacctgaaccttgacgaa
gtttggagaattgttgagccattgttatctccgatcgtgactcccgataagctcgagttg
cctccacttcaagaactgaatgaattatgtgactctctcgggtatttcataagggaaaag
tgtgttaatacgggagaaatggtgcatgccaagctttggttacagctggatgatattttg
ttggtcggagaggcattcaatcgaagcaaaaaggtagcaaaaggaaaagcagctttatat
ctattgaaggaactcgaggatagagggatctcccgaaagagaacgaaacagggtcatgcc
ggttcgagtggaaccactgatgatggtttgttagagccaaaaatgtgtaagaagcagaag
atagctgagattccttctccgactaacgattcttcaaggacagcatatggagttgagatt
ccttctccggctaacgattcttcaaggacagcatatggttttagctccgacgccctagtt
attgcaaggataaacacgaataaaggacaaccgagggccactctttacgagacttgtcgg
aaacagttatggcctaggcctacattcgaaacaacagaagaaagatcacgttctcccatg
gaaatcggcaaaggtgcagaccgaaaaatcgggtttaacagctttgtaacgaagatcacc
ttgaatgtaccgagttcaggcattattgaatgcaccggagatgtaagagccgataaaaag
agctcttgggactctgcagcaatccttatgctttacagccttaaagagctagggaagctc
atcatccgcgaatcctacttccgagacatcaagaacggtgtagtatcgtccggcagtcat
cgaccactgccttacaataataaaataatttttttcaatttagacaatcatatttatttt
tga
DBGET
integrated database retrieval system
