Gossypium arboreum (tree cotton): 108462871
Help
Entry
108462871 CDS
T05776
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gab03009
]
108462871
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
108462871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IP5PC_F
Beta-prop_WDR75_1st
Beta-prop_SPT8
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_NWD2_C
WDR54
PQQ_2
BCAS3_WD40
Beta-prop_RIG_2nd
PEP5_VPS11_N
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
108462871
NCBI-ProteinID:
XP_017618268
LinkDB
All DBs
Position
13:114845954..114847484
Genome browser
AA seq
404 aa
AA seq
DB search
MSSPSHPIVLTSSLNGSITAFDAVSGVPLCHFSGSRSPYHGLALVGNSFIATSHISAETS
SASIHLYNWWSSTALHNFLVPEPVAPLSATLDGLYLFAGGLSGSIHALSVPSGEILASYS
AHNKPVSCLKISEDGSLLISGGDDGTISFVPIFQIIEASPDKSSTSLMLQRFVAHDGSVT
AIDSIMAQCNSTIISSSLDCTIKIWGLLDGTKLRTVTFPCAIMGIALDQIRKEFFAASSD
GFIYKGSINAGSKKHVNQTQEFIRWAQKHESGIVSLVMVSETNNLVSASEDGKVYIWEIE
TGEAIMGLDNDVGSISDMVVANGMERGLKFGKKADNVYDGYSGLCRVELSRSLKDTLDIE
DVLRVATKDRSRAIDMLESAISAYERLLQLILKEAKKGPSSSKS
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctccttcgcatcctattgtcctcaccagctcccttaatggttccattactgcc
ttcgatgctgtctctggtgtccctctttgtcacttctctggcagcaggtctccttaccat
ggtcttgcccttgttggcaactcattcattgctacttctcatatatctgctgagacttct
tcagcctctattcatctctacaattggtggtcttcaacagctctgcacaattttcttgtt
ccagaacctgttgcacccttgtcagctacccttgatggcttgtatttgtttgctggtggc
ctttcaggttctatacatgctctctcagttccttcaggggagatactcgcatcatattca
gcacataacaagcctgtttcctgcctcaaaataagtgaagatgggtcactattgatatct
ggtggtgatgatggtacaatttcttttgttccaatctttcaaatcatcgaggcatcacct
gataagagctccaccagcttgatgttgcagagatttgttgcacatgatggctcagtgaca
gcaatagactctattatggcacagtgcaactctaccataatatcaagctcgctggattgc
acgattaagatttggggattgttggatggaacaaagttaagaacagtgacattcccatgt
gccattatggggatagcattggatcaaataaggaaagaattttttgctgcaagctctgat
ggattcatctacaagggatcaataaatgctggaagcaaaaagcatgtgaatcaaacacag
gagttcattagatgggctcaaaagcatgagagtgggattgtatctttagttatggtgagt
gagacaaacaatttggtatctgcttcagaagatgggaaggtttatatatgggagattgaa
acaggtgaggccattatgggacttgataatgatgtagggagcattagtgatatggtggta
gctaatggtatggagcgaggcttaaaatttggtaaaaaggctgacaacgtttatgatgga
tatagtggattatgcagggtggagctgagcaggtcactaaaggacactttggacatagaa
gatgtgttgagggtggctacaaaagaccgaagcagagccattgatatgcttgagtcagca
atttcagcgtatgaaaggttgctacagctcattctcaaggaagccaagaaaggacctagt
agcagcaaaagttga
DBGET
integrated database retrieval system
