Gossypium arboreum (tree cotton): 108463557
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Entry
108463557 CDS
T05776
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108463557
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108463557
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108463557
NCBI-ProteinID:
XP_017618971
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Position
13:18422054..18423966
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AA seq
442 aa
AA seq
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MAGVGNRSFSLILYFLCLGVIIPSLEAHIAEYDDNWRERELQAKENLEKAYNPNPEEVTQ
HFNDHVARTLMGFRTNSTRRMLKKRKGGPCEATNPIDQCWRCDRNWEKNRKKLADCALGF
GRGTTGGKDGPIYVVTDPTDDVLNPSRGTLRHAVIQNRPLWITFARGMIIRLKEELLMTS
NKTIDGRGANVHIAYGAGITIQFAKNVIIHNIHIHNIFPSKGGKIKDGENHLGLRTRSDG
DGISLFGATNVWLDHLSVYKCSDGIIDAIQGSTAITISNCHFTDHNDVMLFGASDSYSAD
EKMQITVAFTHFGKNLVQRMPRVRFGFVHVVNNDYRHWIMSAIGGSSHPTIISHGNRFRA
PRNIAAKEVCKREYATEQEWKNWDWRSEGDLMLNGAIFTQSGDPRAAKKFGGDKMIAYKP
AHMVPLLVRWSGTLECRPNKPC
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgggaaatagaagttttagcttgattttgtatttcctgtgcttgggggtt
ataatccctagcctcgaggctcacatcgcagaatatgatgacaattggagggaaagggag
ttgcaagctaaagaaaacctggagaaggcttacaatcctaacccagaggaagtcacccag
catttcaacgaccatgtggccagaaccttgatggggtttcgcaccaattccacaaggagg
atgttgaagaagcgtaagggaggtccttgtgaagcaaccaaccctatcgaccaatgctgg
cgatgtgaccgcaactgggaaaagaacaggaaaaagttggctgattgcgcacttggattt
ggccgtggtactaccggtggaaaggatggacccatttacgttgtcactgatcctaccgat
gatgttcttaacccaagtcgcggaactttgcgtcatgctgtgatccagaaccgcccactt
tggatcactttcgctagggggatgattattaggttgaaagaggagctccttatgaccagc
aacaaaaccatcgatggtaggggagccaacgtgcatattgcttatggggctggtattacc
atccagtttgccaagaacgtcatcattcataacatccatatccataacatcttccctagc
aaaggtggcaagatcaaggatggcgagaaccaccttgggttgaggacaaggagcgatggt
gatggcatctcccttttcggagcaaccaacgtttggcttgaccacctttccgtttacaag
tgctccgatggtatcatcgatgctattcagggttctaccgccattaccatttccaactgc
cacttcactgaccacaacgatgtgatgctgtttggagcaagcgacagctacagtgctgat
gagaagatgcaaatcaccgttgctttcacccacttcggtaaaaatttggtacaaaggatg
cctagggtccggtttggtttcgtccatgttgtgaacaacgattaccgtcattggatcatg
tccgctattggaggcagcagtcaccctacaattatcagccatggcaaccgatttagagcc
ccacgtaacattgcagctaaagaggtttgcaagagggaatatgcaactgaacaagagtgg
aagaactgggattggagatcagagggtgatttgatgttgaacggtgccattttcacacaa
tcaggagacccgagggccgccaagaaattcggaggggacaagatgatagcatataagccg
gctcacatggtgccactcctggtgaggtggtcaggaacactcgagtgccgcccaaacaag
ccttgttag
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