Gossypium arboreum (tree cotton): 108463773
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Entry
108463773 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108463773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108463773
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108463773
Spliceosome [BR:
gab03041
]
Complex A
U2 snRNP components
U2 related factors
108463773
Complex B
108463773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
108463773
NCBI-ProteinID:
XP_052876478
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All DBs
Position
10:127794042..127799314
Genome browser
AA seq
1108 aa
AA seq
DB search
MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEREKEKHRDRGRERKDREREKE
KERERAREKEREREKREREREREREREREKREREREREREREKEREREKKAREKEKRREY
NSDDSKEEKERHRKRRRRERDDEDDGNDDYKERESKSNRGESPVRKKSGEDELEKKGKKS
REEEMEDEQRKLDEEMEKRRRRVQEWQELRRKKEEMEREKRGEGNAVEEEEAKVGKAWTL
EGESDDDEAASPMNAETSMDVDDNENAKPDGKETGDAMLEGGNSEDGKDKMVVDQNGENG
VAENDDEIDPLDAFMNSMVLPEVEKLSNAVVDPPPSDNNGNLKTDKKDGLSNGGQQQPKK
GSNKALGRIIPGEDSDSDYGDVENDEENLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYK
PFRKNFYIEVKEISRMTPEEVSAYRKELELKLHGKDVPKPIKTWHQTGLTSKILETIRKL
NYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLI
MAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL
CTSGGKISNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL
ARKVLNKPVEIQVGGRSVVNKDITQLVEMRPESERFLRLLELLGEWYEKGKILIFVHTQE
KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL
VINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPDDLK
ALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDE
DEGVRKAGGDISQQTALAQIAAMAAASKASTALMQNPLSSGQLLPNAVLPISLPGVLGVS
MPGTAAVVPGSGLSGLPNEEAARKAALQAALNLQHNLAKIQADVMPEHYEAELEINEFPQ
NARWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEGPTELSVKRAKA
ELKRVLEDISHQSLQLPGGTQPGRYQVL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcagaaaagagaaggcaccgtgagagaagagatagggatagggatagggat
cgagaacggcgtcgttccgagagggagaagagcagcgattccgatagagaaaaggagagg
gaaaaagaaaagcatcgagataggggaagggaaaggaaagatagggaacgagagaaggaa
aaggagagggaaagagctagggagaaggaaagggaaagggaaaagcgtgaaagggaaagg
gaaagggaaagggaaagagaaagggagaagagggaaagagaaagagaaagagaaagggaa
agggaaaaagagagggagagggaaaagaaggcgagggaaaaggagaagaggagggaatat
aatagtgatgatagcaaggaggagaaggaacggcatagaaagcggcgaaggagggaacgg
gatgacgaagatgacggtaacgatgattataaggagagggagagtaaatcgaatagggga
gagagtcctgttaggaaaaagagcggtgaagatgagttggagaagaaagggaagaaaagt
agggaagaagaaatggaagatgagcagcgtaaattggatgaggagatggagaaaaggagg
aggagggttcaagaatggcaggagttgaggaggaagaaggaagaaatggagagggagaaa
cgtggggaagggaatgcggttgaagaggaggaggctaaggttggtaaagcttggactctt
gaaggggaatcggatgatgatgaagcggcttctccaatgaatgcggagacgagtatggat
gttgatgataatgagaatgctaagcctgatggtaaggaaactggagatgcaatgcttgaa
ggtgggaattctgaggatggaaaagataaaatggttgttgaccaaaatggggagaatggg
gttgctgagaatgatgatgaaattgacccattagacgcatttatgaattcaatggtgtta
cctgaagttgagaagctaagtaatgcagttgttgatcctcctcctagtgataacaatgga
aacctgaagactgataaaaaagatggcttgagtaatggtggacagcagcagccgaagaaa
ggttcgaacaaggcacttgggagaatcattcccggcgaagattcggattcggattacggg
gatgttgagaatgatgaagagaatttagaagatgaagacgatgatgagttcatgaaaagg
gtaaagaagacaaaagctgaaaaactatcgattgtagaccattcaaagatcgattataaa
ccattcaggaaaaatttctatattgaagttaaggagatatctagaatgacacctgaggaa
gtgtctgcttataggaaggaattggaattgaagttacatggaaaggatgtgccgaaacca
atcaaaacctggcatcaaactggactcacaagtaaaatattagagacaataaggaagcta
aattatgagaagccaatgccaattcaagctcaggcactgcctgtaatcatgagtggtcga
gactgcattggtatagcaaaaactggctctggtaaaacccttgcttttgtgttacctatg
ttaaggcatattaaagatcagccacctgtagtagctggagatgggcctattggactcatt
atggcacccacaagggagcttgtacagcagattcatagtgacataaagaagttcaccaag
gtaatgggaatcagatgtgttcctgtctatggaggttctggtgttgcccagcagattagt
gaattaaaaaggggaacagagattgttgtatgtactccaggtaggatgattgatatactt
tgtaccagtgggggaaaaattagtaatcttcgtagagtgacatacttggttctggatgaa
gctgacagaatgtttgatatgggttttgaacctcaaatcactcgaattgttcaaaatatt
cgacccgatcgccaaactgtactattttctgctactttccctcgccaggttgagattttg
gcacggaaagtgttgaataaacctgttgaaatacaggttggtgggagaagtgttgtgaac
aaggacataacccagttggttgagatgaggccagaaagtgaaaggttcctaagattgtta
gaacttctaggtgaatggtatgagaaggggaaaattctgatttttgtccacactcaagaa
aagtgtgatgctttgttcagggatttgctcaaacatggttacccttgtctgtcacttcat
ggggccaaggatcagactgatcgggagtccaccatttctgattttaagagcaatgtttgc
aatttgttgattgcaacaagtgttgcagctaggggtttagatgtaaaggagcttgaatta
gtgattaattttgatgtcccaaatcattatgaagattatgttcaccgtgttggtaggact
ggtagagctgggcggaaaggctgtgctatcacatttatctctgaggatgatgcaagatat
gcaccggatctcgtaaaagctttagaactctctgagcaagttgttcctgatgacctgaaa
gctctcgcagatggctttatggcaaaagtcaatcagggacttgagcaggctcatggaaca
ggttatggtggaagtggttttaaattcaatgaagaggaggatgaaaagagaaaagcagca
aagaaagcacaagcaaaagaatatgggtttgaggaagacaaatcagactcggaagatgaa
gatgaaggggtgcggaaggcaggtggtgacatctcacagcagacagcacttgctcagata
gctgccatggctgctgcctccaaagctagtactgctttgatgcagaatcctctatcatct
ggccaactgcttcccaatgctgtattgcctatttctcttcctggtgtacttggtgtctca
atgcctgggactgcagcagttgttcctggtagtgggctgtctggtcttccaaatgaagag
gctgctcgaaaagctgcactgcaagctgctctcaatttacagcataacctagcaaagatt
caagccgatgttatgcctgaacattatgaagctgagttggagattaatgaattcccacaa
aatgctcgatggaaggttacccacaaggaaactttgggcccaatatcggaatggactgga
gctgctattactacaaggggccagtatttcccacctggtcggatcccaggaccaggagaa
cgcaagctttacttgttcattgaaggacctactgagttatctgttaagagagctaaggca
gaactgaaacgtgtgctggaagacatctcacaccagtccttgcaacttcctggtgggact
caacccggcagataccaagttttgtag
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integrated database retrieval system
