KEGG   Gossypium arboreum (tree cotton): 108463885
Entry
108463885         CDS       T05776                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
gab  Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:gab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gab03041]
    108463885
Spliceosome [BR:gab03041]
 Complex B
  Other components
   Complex B specific factors
    108463885
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 LisH_TPL Beta-prop_EML NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_NWD2_C WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Nup120_160 Ge1_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_LRRK2 Beta-prop_WDR35_TULP_N DUF7165 Beta-prop_WDR75_2nd Beta-prop_VPS8 VPS8_N PROPPIN Beta-prop_IP5PC_F zf_topless Beta-prop_IFT122_2nd 7TMR-HDED
Other DBs
NCBI-GeneID: 108463885
NCBI-ProteinID: XP_017619362
UniProt: A0A0B0PJ20
LinkDB
Position
13:99893488..99907814
AA seq 512 aa
MTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAIL
PQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHL
LVRTYFDPNEAYQDSTKEKRRAQIAQAIAAEVSVVPPSRLMALIGQALKWQQHQGLLPPG
TQFDLFRGTAAMKQDIDDMHPTTLSHTIKFGKKCHAECARFSPDGQFLVSSSVDGFIEVW
DYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRIRTGQCLRR
LERAHSQGVTSLVFSRDGSQLLSTSFDSTARIHGLKSGKLLKEFRGHTSYVNDAIFTADG
SRVITASSDCTVKVWDVKTTDCLQTFKPPPTLRGGDASVNSVHLFPKNTDHIIVCNKTSS
IYIMTLQGQVVKSFSSGKKEGGDFVAACVSPKGEWIYCVGEDRNIYCFSYQTGKLEHLMT
VHEKDVIGITHHPHRNLVATYAEDCTMKLWKS
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgactctagaaatcgaagcacgagacgttattaagattgtgctccaattttgcaaagaa
aattccttgcatcaaacgtttcaaacgctacagaacgagtgtcaggtttctctgaatact
gtagatagcatcgagacgtttgttgctgatattaacagtggaagatgggatgccattttg
ccccaagtggctcaacttaagctcccaaggaataaactggaggacttatatgagcagatt
gtattagaaatgattgaactaagagagttggacactgcacgtgctattttgaggcaaacc
caggcaatgggtgttatgaagcaagagcaacctgaaagatacttgaggcttgaacatctc
cttgtcagaacttattttgatccaaatgaggcttaccaggattcaacaaaagagaaacgt
cgtgcacagattgctcaagccattgctgcagaagtgagtgtcgtgccaccttcacgttta
atggccttgattggtcaggctctaaagtggcaacaacatcaaggtttgcttcctccagga
acacagtttgacttatttagaggaacagctgctatgaaacaagacattgatgacatgcat
ccaacgaccttatcgcatacaatcaaatttgggaagaaatgtcatgcagaatgtgctcgg
ttctcaccagatgggcagtttcttgtttcttcttctgttgatggatttattgaggtctgg
gattacataagtgggaagctcaagaaggatcttcagtaccaggcagatgaaactttcatg
atgcatgatgatcctgtactttgtgttgattttagcagagactcagagatgattgcgtct
gggtcacaagatggaaagataaaggtttggcgcataaggacaggtcaatgcttgcgccgt
cttgaacgtgcacactctcaaggtgtgacaagtcttgtcttctctcgtgatggaagccag
ttactaagtacatcttttgatagtactgcaagaatccacggattgaaatctggaaagttg
ctcaaagaatttcgtgggcatacatcttatgtgaatgatgccatttttacagctgatgga
agtcgtgttattactgcatccagtgactgcactgtcaaggtgtgggatgtaaaaacaaca
gactgcctacaaacatttaaaccaccacctacgttaaggggtggtgatgcttcagtgaat
tcagttcatcttttcccgaaaaatacagatcatattattgtgtgcaataagacgtcgtca
atatacatcatgacacttcaaggacaggttgtgaaaagtttctcatccggtaaaaaggag
ggtggagattttgttgctgcctgtgtctcaccaaaaggtgaatggatatactgtgtaggc
gaggacaggaatatttactgcttcagctaccaaacaggaaaactagagcatctaatgaca
gtccatgaaaaggatgtaataggcatcacacatcatcctcacaggaatctggtagctacc
tatgcggaagattgcaccatgaaattatggaagtcttga

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