KEGG   Gossypium arboreum (tree cotton): 108463980
Entry
108463980         CDS       T05776                                 
Name
(RefSeq) uncharacterized protein LOC108463980
  KO
K15361  WD repeat-containing protein 48
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    108463980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gab03400]
    108463980
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     108463980
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd WD40_MABP1-WDR62_1st Beta-prop_EIPR1 WD40_RFWD3 RAWUL Beta-prop_IP5PC_F Beta-prop_DCAF12 Beta-prop_Nup120_160 WDR90_beta-prop_4th VWA_3_C
Other DBs
NCBI-GeneID: 108463980
NCBI-ProteinID: XP_017619508
LinkDB
Position
13:121577357..121586935
AA seq 763 aa
MHRVGSAGNNSNSSRPRKEKRLTYVLNDSDDTKHSAGINCLAVLKSSVSDGCNYLFTGSR
DGTLKRWALAEDAATCSATFESHVDWVNDTVIAGENTLVSCSSDTTLKIWNCLSDGTCTR
TLRQHSDYVTCLAAAERNANVVASGGLGGEVFVWDIEAAVTPLSKSSDVMEDDFSNGING
SANSLPVSSLRPISSNNSITAHTTQCPGYVPIAAKGHKESVYALAMNDNGSLLVSGGTEK
VVRVWDPRTGSKTMKLRGHTDNVRALLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAV
HTDSVWALASTPTFTHVYSGGRDLSLYLTDLTTRESLLLCTKEHPVLQLALHDDSIWVAT
TDSSVHRWPAEGRNPQKVFQRGGSFLAGNLSFSRARVSLEGSTPAAVYKEPIFSIPGTPA
IVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGQVSFDEKKQELFEMVSIPAWFTV
DTRLGSLSVHLDTPQCFSAEMYSVDLNITGKPEDDKVNLARETLKGLLAHWMTKRRQRLG
SQASANGDVLSGKDNTARSLAHSRIEVDGNAENDSMVHPPFEFSMVSPPSIISEGSQGGP
WRKKITELDGTEDEKDFPWWVLDCVLNNRLPPRENTKCSFYLHPCEGTAVQILTQGKLSA
PRILRINKVVNYVVEKMVLDKPIDTGNTDGSLAPGHGGQLQHSAVVDGSFKSGLKPWPKP
RPSVEILCNNQVLSTDMSLATVRAYIWKKPEDLVLNYRVVQGR
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgcatcgagttggcagtgctgggaacaattccaattctagccgcccgcgtaaagaaaag
aggctgacatatgtattaaatgactctgatgacacaaagcattctgctggtataaattgt
ttggctgtgctaaagtcatctgtctctgatggttgcaactatctcttcactggaagccgt
gatggcacgcttaagagatgggcactggctgaagatgctgccacttgctctgctacattt
gagtcacatgttgattgggtaaatgatactgtaattgctggtgaaaatacacttgtttca
tgctcgtcagacaccacattgaagatatggaattgcttgtctgatgggacttgtaccagg
actcttcgtcaacactctgactatgttacatgtctagctgctgctgaaagaaatgcaaat
gtggttgcctctgggggtcttggtggggaggtttttgtatgggatattgaagctgcggtt
actccactctctaagtccagtgatgtaatggaagatgatttttccaatggtatcaatggt
tctgcaaattcattacccgtatccagtctgcgaccaattagctcgaataacagtattact
gctcacacaactcagtgtcctggatatgtccccatcgctgccaaaggccataaagagtca
gtctatgcattggcaatgaatgataatggatcccttcttgtctctggtggaactgagaag
gttgtgcgtgtttgggacccaagaacaggttcaaagactatgaagttaagagggcataca
gataacgttagggctctgcttctggattctactggcaggtattgtttatcagggtcctct
gattctatgatcaggctatgggaccttggtcagcagcgttgtgtgcattcatatgctgtg
catacagattctgtttgggcacttgcgagcaccccaacatttactcatgtttatagtggt
ggtagagatctttctttgtatttgacagacttgacaacaagagagagtcttttgctttgc
acaaaggaacacccagttttgcagttggcgttgcatgatgatagtatctgggttgcaacg
acagattcttcagttcatagatggcctgctgaaggaagaaatcctcagaaggtctttcaa
agaggtggttcattcttggctggaaacttgtctttttcaagggcaagagtttccttagaa
gggtctacccctgctgctgtttataaagaaccaatcttttccattcctggaactccagca
atagttcagcatgaaattttaaataacagaaggcatgtattgactaaggatactgctggt
tcggtaaagctctgggagataaccaggggtgttgtggtcgaggactatggacaggtttca
tttgacgagaaaaagcaggagttgtttgagatggtaagcattccagcatggttcactgtg
gatacccggcttggaagcttgtctgttcatttggacacaccccaatgcttttctgcggag
atgtattctgttgatctaaacataactgggaagcctgaggatgataaggttaatctagct
cgtgaaacccttaaaggtctgttggctcattggatgaccaaaagaaggcaaagacttggc
tcccaggcttccgctaatggagatgttttatcaggaaaggataatactgcaagaagtctt
gctcattcaagaattgaggtagatggaaatgctgaaaatgactccatggtccatcctcct
tttgagttttctatggtttcccctccatcaattatctccgagggttcccaaggaggtcct
tggagaaagaaaattactgaattggatggaactgaggatgagaaagacttcccttggtgg
gttttggattgtgttttaaacaatcggctaccaccacgagaaaacaccaagtgcagcttc
taccttcatccatgcgaaggtacagctgttcagatcctcacacaagggaagttaagtgct
cctcgtatattgagaataaataaggttgttaattatgtcgtagaaaagatggtgcttgac
aaaccaattgatactggaaataccgatgggtcacttgctcctggacatggaggacaattg
cagcattcagctgtcgtggatggttcttttaaatctggattgaagccttggccgaagcct
aggccttctgttgagattttatgcaataatcaggtcttatctacagacatgagcttagcc
actgtgcgggcctacatatggaagaaacctgaggatttggtacttaattatagagtggtt
caaggcaggtga

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