Gossypium arboreum (tree cotton): 108464031
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Entry
108464031 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108464031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108464031
03041 Spliceosome [BR:
gab03041
]
108464031
03009 Ribosome biogenesis [BR:
gab03009
]
108464031
03016 Transfer RNA biogenesis [BR:
gab03016
]
108464031
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108464031
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108464031
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108464031
Complex C
U4/U6.U5 tri-SnRNP related factors
108464031
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
Helicases
108464031
Transfer RNA biogenesis [BR:
gab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108464031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Late_protein_L2
Motif
Other DBs
NCBI-GeneID:
108464031
NCBI-ProteinID:
XP_017619584
LinkDB
All DBs
Position
13:123029339..123040094
Genome browser
AA seq
990 aa
AA seq
DB search
MEEESAAPGKRKSPEKSDVTETPKQESAPKRRTLARTCVHEVAVPSGYVSTKDESIHGTL
SNPAYNGEMAKTYQFELDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHQEFNDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDLFVKQRPGDWSKNKE
GKSGGRAAKGGGGSGGSDIYKIVKMIMERKFHPVIVFSFSRRECEYHAMSMSKLDFNTKE
EKDDVEQVFRNAVLCLNEEDRCLPAIELMLPLLMRGIAVHHSGLLPVIKELVELLFQEGL
IKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQMTAEHVIRNSFHQFQ
YEKALPDIGKKVSKLEQEAALLDASGEAEVAEYHKLKLELAQLEKKLMSEITRPERVLYY
LDPGRLIKVREGSTDWGWGVVVNVVKRTPAGLGALPARGGGYIVDTLLHCSPGSSENGVR
PKPCPPCPGEKGEMHVVPVQLPLISALSKIKVSIPADLRPPEARQSLLLAVQELGTRFPQ
GLPKLNPVTDMKIEDQEIVELVKQIEEHEKKLFAHPLHKSQDEHQIRSFQRKAEVNHEIQ
QLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMF
NGTFNDLDHHQVAALASCFIPVDKSSEQIQLRTEIAKPLQQLQESARKIAEIQHECKLDV
NIDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQ
AVGEVNLESKFAAASESLRRGIMFANSLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaatcagctgcaccagggaagcgaaagtcacctgaaaagtcagatgtcacg
gagacccctaagcaagaatctgcccctaaaaggagaacactagcacggacatgtgtgcat
gaggtcgcagttccaagcgggtacgtttcaactaaagacgaatccattcatggcacactc
tcgaatccggcctacaatggggaaatggctaaaacttatcagtttgagcttgatcctttt
cagcaagtttctgtagcgtgcttagaaaggaacgagtcagttttggtttcagcacatacg
tctgcaggtaaaactgcggttgctgagtatgcgattgctatggcctttagagataagcaa
agggtcatatatacttcaccgttgaaagctttgagtaaccagaagtacagggagctgcat
caagagttcaacgatgtggggctgatgactggtgatgttaccttgtctcctaatgccagt
tgtctcgtcatgacgacagaaattcttagagggatgctttacaggggctcagaggttttg
aaggaggttgcatgggttatttttgatgaaattcattatatgaaagatagggaaagagga
gttgtttgggaagagagtataatatttttgccaccagcaataaaaatggttttcctttca
gcaaccatgtccaatgccactgaatttgcagagtggatttgtcatttacacaaacagcct
tgccatgtggtgtacacggatttccggccaactcctttgcagcattatgttttccccatg
ggtgggagtggattgtaccttgtggttgatgagaatgagcaatttagggaggacaatttt
atgaagctccaggacttatttgtaaagcagagaccgggtgattggagcaagaataaagaa
gggaagagtggtgggagagctgccaaaggtgggggtggttcagggggttctgacatatac
aaaatcgtgaagatgattatggaacggaaatttcacccagtcattgtttttagcttcagt
agaagagagtgcgaatatcatgcaatgtctatgtctaagcttgactttaatacgaaagag
gagaaggatgatgtagaacaagtttttcgcaatgcagtactgtgcttgaatgaagaagat
agatgtttgcctgccattgaattaatgttaccactgcttatgagaggcattgctgtacac
cattctggtcttcttcctgttatcaaagaactggtggagcttcttttccaggaaggcctt
ataaaggcactttttgccacagaaacttttgcaatgggtttaaatatgccagcaaaaact
gttgtattcacttctgttaagaagtgggatggtgatagccatcggtatataggatctggt
gagtatatccagatgagtggaagggcagggcgccgtggcaaagatgaacgtggtatttgt
attattatggttgatgagcagatggagatgaatacactcaaggacatggttttgggtaaa
ccggctcctttagtcagtactttcagactcagctactattcaattttgaatttaatgagc
cgtgcggaagggcagatgactgctgagcatgtgataaggaattcgttccaccagtttcag
tacgagaaggccttacctgatatagggaagaaagtttcaaagctggagcaggaagctgcc
ttgctagatgcttctggagaggctgaggtagctgaatatcataaactaaaacttgaatta
gcccagttagagaagaagttgatgtcagaaatcactaggcctgaaagagtactttattat
ctcgatcctggacggctgatcaaagtaagagaaggcagtacagactggggctggggagtt
gtagttaatgttgttaaaaggacccctgcaggattaggtgcattgcctgcacgtggtggt
ggttatattgtggatacattacttcattgttcgcctggttctagtgagaatggtgtacga
ccaaaaccatgccctccctgtccgggggagaagggtgaaatgcatgtggttcctgtccag
ttgcctcttatttctgctctgagtaaaattaaagtgtccatacctgctgatcttcggcca
cctgaagccaggcagagtttattacttgcagtgcaggagctagggactcgatttccacaa
ggccttccaaaacttaatcctgttacggacatgaaaattgaagatcaagaaattgttgag
ttagtgaaacaaattgaggaacatgaaaagaagttgtttgctcatccactccacaagtct
caagatgagcatcaaattagatcttttcagaggaaggcagaggtgaatcatgagattcaa
cagctcaagtcaaaaatgcgtgattcccagcttcaaaaattccgtgatgagcttaagaac
cgttcaagggtcctgaagaagttaggccatattgatgctgatggtgttgttcagttgaag
ggacgggcagcctgcttgatagacactggagatgaactgcttgtgacagaactgatgttt
aatggtacattcaatgatcttgatcatcaccaagtagcagcccttgcaagttgtttcatt
ccagtagataaatcaagtgaacaaatacagttgaggacagagattgccaaaccattacag
caactccaagaaagtgcaagaaaaatagcagagatacaacatgaatgcaaattggatgta
aacatcgacgaatatgtagaatcaactgtgagaccatttttgatggatgtgatttattgt
tggtcgaagggtgcaacttttgcagaggtaatacagatgaccgatatatttgagggtagc
attattaggagtgctagaaggcttgatgagtttctgaaccagctccgcgctgccgcacaa
gctgttggagaagtcaatttggagagtaagttcgctgcagcaagtgaaagcctacgtcga
ggtatcatgttcgccaactccctttatctgtaa
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