Gossypium arboreum (tree cotton): 108464310
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Entry
108464310 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108464310
09122 Translation
03013 Nucleocytoplasmic transport
108464310
03015 mRNA surveillance pathway
108464310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108464310
03041 Spliceosome [BR:
gab03041
]
108464310
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108464310
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108464310
Spliceosome [BR:
gab03041
]
Complex C
Other components
EJC/TREX
108464310
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108464310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
108464310
NCBI-ProteinID:
XP_017620030
LinkDB
All DBs
Position
13:123516242..123521083
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPSPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgatgcctacgaggaagagctcctcgattacgaggaagaa
gaagagaaagcccctgactctgtcactgctaaggtcaatggcgaggccggcaagaagggc
tatgttgggattcacagttctggattcagagacttccttttgaaaccagagcttcttcgg
gccattgtcgattctggattcgagcacccttccgaagtgcaacatgaatgtattccccaa
gctatactgggtatggatgttatttgccaagctaaatcaggaatggggaagactgcagtt
tttgttctatcttcattacagcaaattgaaccaagtcctgggcaagttattgccctcgtt
ttatgccatacaagggagttagcttaccagatttgtcatgagttcgagaggttcagtact
tatctgcctgatatcaaggttgctgtcttctatggtggtgtcaacatcaaagttcataaa
gatttgctgaaaaatgaatgccctcacattgttgttgggacacctggaaggattttggct
ctgaccagagacaaggacctttccttgaagaatgtgaggcatttcattctcgatgaatgt
gacaagatgctggaatcacttgacatgaggagagatgtgcaggagattttcaagatgacc
cctcatgataagcaagttatgatgttttcagccacactcagcaaagaaatacgcccggtt
tgcaagaaattcatgcaagatcctatggaaatttacgttgacgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgaactggagaaaaaccgaaagttg
aatgacctccttgatgcattggacttcaatcaagttgttatctttgtcaaaagtgtgagc
cgagcagctgagttgaacaagttacttgtggagtgcaattttccttccatatgcatccac
tctggcatgtctcaggaagaaagattaactcgctacaagggtttcaaggaggggcataaa
agaattcttgtggcaacagatttggttggaaggggaatcgacattgaacgagttaacatt
gtcatcaactatgacatgccagattctgctgatacatacctgcacagggttggtagagct
ggtcggtttggcaccaagggtcttgcaattacatttgtttcatccgcttcagattctgat
gtgctcaatcaggtccaagagaggtttgaggttgatataaaggagcttcctgagcagatt
gatacatctacgtacatgccatcataa
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