Gossypium arboreum (tree cotton): 108464429
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Entry
108464429 CDS
T05776
Name
(RefSeq) protein RRP6-like 2 isoform X2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108464429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108464429
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108464429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
108464429
NCBI-ProteinID:
XP_017620216
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All DBs
Position
13:complement(80829655..80848072)
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AA seq
930 aa
AA seq
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MNINNYPIAMEYSSEASKDAQSLQTLASGPFSSSLSSLSCSSRTLPSDQDFHFFKNFDGF
KLPIDQIAKISDSLLESIGSSAKTWCVNKAIKFPDRIGSIADDEAYDWLVDINDEILERF
DVSVDEFQNIRKKEEETGRFIGSDPEINGFQLVYEKKKKKGDGALMGDSVAESVSGKEGG
SPSYSGVKVKKWALAAGTSGKAKVPFHIPTIRKPQEEYNILVNNSNKPFEHVWLQSSEDG
QRFVHPLEKLSVMDFVDKDIADIEPVKPPSIESTPFKLVEEVKDLKELAAKLRSVNEFAV
DLEHNQYRSFQGLTCLIQISTRNENFVVDTLKLRIHIGPYLRELFKDPTKKKVMHGADRD
IVWLQRDFGIYICNLFDTGQASRVLKMERNSLEHLLQHFCGVTANKEYQNADWRLRPLPA
EMLRYAREDTHFLLYIYDLMRIKLLSMPMEPEHCDAALVEVYKKSSDVCMQLYEKELLTE
NSYLHIYGLQAAGLNSEQLSIVSGLYEWRDHIARSEDESTGYVLPNKILIEIAKQMPVTA
GKLRRLLKSRLPYVERNLGAVVSIIKRSMQNAVSFEAAAQQPKMGRVLHASEECVAVNDG
AVVIPLETRTDLKIAKNRTEIIDGGMRGLDGKTAKLASPPRKELVTTGSSIPGPDMDKKQ
KRYHMEPVVNSISMSAREGLTDSGLSPPSTKASGATVQILKRPNCGFGAFLGNSATKKKS
DIDKKKEENKLEQIRSLVNLQFHSFLGIEEQSKLVTEEATKVSQISQPEEPPPVVATELT
SEDIIMLEESSNKDESNDGGGGPKPSDASVGDSPVCYSSETSKGDNEETMSLSDLSTSFQ
QSTQSFKVKESKEQSGSLQIKPFDYDAARKQVKFGVDTEEKPGSQVNSARKKKSSAVGLL
QIDDGTKLFPQARRRQAFPASGNRSATFRP
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcaacaattatccaattgcaatggaatactcgtctgaagcttcaaaagatgcc
caatctcttcaaaccctagcttcgggtcctttctcttcttctctttcctcattgtcttgc
tcatctcgaaccctcccctccgatcaagactttcatttctttaagaatttcgacggtttc
aagctccccattgatcaaattgccaaaatatcggattctttgcttgaatccatcggctca
tcagctaaaacatggtgcgtcaataaagcgatcaaatttcctgacagaattgggagtata
gccgatgatgaagcttatgattggcttgttgatatcaacgacgaaatcttggaacgattt
gacgtttccgtggatgaatttcaaaatatccgaaagaaagaagaggaaacggggaggttt
atcgggtcggatccggaaattaatgggtttcaactggtttacgagaagaaaaagaagaaa
ggggatggtgcgttaatgggtgactcggttgctgagtcagtgagtgggaaggaaggtggg
tctccgagttattctggagtgaaggtgaagaaatgggcgttggctgcagggacttcgggg
aaagcgaaggttccttttcatataccaacaatacggaagccgcaggaagagtataatatt
cttgtgaataattcgaataagcctttcgaacatgtttggttgcaaagcagtgaggatggg
cagcgctttgttcatccactggagaagctgtctgttatggattttgtggataaagatata
gcagatattgagcctgtaaaaccaccctcaattgagtctaccccattcaagctggtggag
gaagtaaaagatttgaaggagttggcagccaaattacgcagtgtaaatgaatttgcggtt
gatttggagcataaccaatatagatcatttcaaggattgacttgtttgatacaaatttct
accagaaatgagaattttgttgtcgatactttgaagctacgaattcatattggcccgtat
cttcgggaattattcaaggatcccaccaagaaaaaggttatgcatggggcagaccgggat
attgtgtggcttcagcgggactttggcatatatatatgcaacctctttgacactggacag
gcctcgagggtcttgaaaatggaaagaaatagtttggaacatcttctgcaacacttttgt
ggagttactgctaacaaagaatatcagaatgcagattggaggttgcgtcctcttcctgct
gaaatgctcagatatgctagagaagacacacactttttactgtacatttatgatttaatg
agaatcaaattgctatccatgcctatggaacctgaacattgtgatgctgcgttggtagag
gtctacaagaaaagttctgatgtatgcatgcaactatacgagaaagagctgctgacagag
aattcatatctccacatatacgggttgcaggctgctggtttgaattctgagcagctatca
attgtctctgggctttatgaatggcgagaccatattgcacgttcagaggatgaaagtact
ggctatgtattgcctaacaaaatacttattgaaatcgccaagcagatgcctgtaactgct
ggcaagttgcgtcgactgttgaaatctagactcccatacgtggagcgaaatcttggtgca
gttgttagcatcatcaagcgttctatgcagaatgctgtctcatttgaagctgctgctcaa
caacctaaaatggggcgtgtgctacacgcatcggaagaatgtgtagcagttaatgacgga
gctgtagtcatacctcttgagactcgtacagacttaaaaattgcaaagaatagaactgaa
atcatagatggtggcatgaggggacttgatgggaaaactgcaaagcttgcttctcctcca
cgtaaagaattagtaacgactggaagcagtattcctggacctgacatggacaaaaaacaa
aaaagataccatatggagccagttgtgaacagtatctcaatgtctgcgagagaaggtctt
accgattcagggctgagtccaccttcgacaaaggctagtggagcaactgttcagattctg
aagagacctaactgtggctttggggcatttctagggaattctgccacgaagaaaaaatct
gatatagataaaaaaaaggaagagaacaagttggagcagatcagatctttggtgaatcta
cagttccactcatttttgggtatagaggagcagtcaaaactggtgacggaggaggcaact
aaagtatcacaaatttcacaacctgaagaacctcctcctgtggtagctaccgagttgaca
tctgaagatataataatgttggaagaaagttcaaataaagatgaatcaaatgatggtggt
ggtggcccaaaacccagtgatgcttctgttggtgatagtcccgtttgttactcctcggaa
acaagtaaaggtgacaatgaggagactatgtccctatctgatttatctacaagcttccaa
caatccacccagtcttttaaagtcaaggaatcaaaagaacaaagtggttctttgcaaata
aagccatttgattatgatgcagccaggaaacaggttaaatttggagtagacacagaggaa
aaaccaggaagtcaagtaaactctgcccgtaagaagaaaagttctgcagtcgggctgctg
caaatagatgatgggacgaagctgttccctcaagctagacgacgacaagcttttcctgca
tcagggaataggagtgcaactttccggccataa
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