KEGG   Gossypium arboreum (tree cotton): 108464429
Entry
108464429         CDS       T05776                                 
Name
(RefSeq) protein RRP6-like 2 isoform X2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108464429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108464429
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     108464429
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 108464429
NCBI-ProteinID: XP_017620216
LinkDB
Position
13:complement(80829655..80848072)
AA seq 930 aa
MNINNYPIAMEYSSEASKDAQSLQTLASGPFSSSLSSLSCSSRTLPSDQDFHFFKNFDGF
KLPIDQIAKISDSLLESIGSSAKTWCVNKAIKFPDRIGSIADDEAYDWLVDINDEILERF
DVSVDEFQNIRKKEEETGRFIGSDPEINGFQLVYEKKKKKGDGALMGDSVAESVSGKEGG
SPSYSGVKVKKWALAAGTSGKAKVPFHIPTIRKPQEEYNILVNNSNKPFEHVWLQSSEDG
QRFVHPLEKLSVMDFVDKDIADIEPVKPPSIESTPFKLVEEVKDLKELAAKLRSVNEFAV
DLEHNQYRSFQGLTCLIQISTRNENFVVDTLKLRIHIGPYLRELFKDPTKKKVMHGADRD
IVWLQRDFGIYICNLFDTGQASRVLKMERNSLEHLLQHFCGVTANKEYQNADWRLRPLPA
EMLRYAREDTHFLLYIYDLMRIKLLSMPMEPEHCDAALVEVYKKSSDVCMQLYEKELLTE
NSYLHIYGLQAAGLNSEQLSIVSGLYEWRDHIARSEDESTGYVLPNKILIEIAKQMPVTA
GKLRRLLKSRLPYVERNLGAVVSIIKRSMQNAVSFEAAAQQPKMGRVLHASEECVAVNDG
AVVIPLETRTDLKIAKNRTEIIDGGMRGLDGKTAKLASPPRKELVTTGSSIPGPDMDKKQ
KRYHMEPVVNSISMSAREGLTDSGLSPPSTKASGATVQILKRPNCGFGAFLGNSATKKKS
DIDKKKEENKLEQIRSLVNLQFHSFLGIEEQSKLVTEEATKVSQISQPEEPPPVVATELT
SEDIIMLEESSNKDESNDGGGGPKPSDASVGDSPVCYSSETSKGDNEETMSLSDLSTSFQ
QSTQSFKVKESKEQSGSLQIKPFDYDAARKQVKFGVDTEEKPGSQVNSARKKKSSAVGLL
QIDDGTKLFPQARRRQAFPASGNRSATFRP
NT seq 2793 nt   +upstreamnt  +downstreamnt
atgaacatcaacaattatccaattgcaatggaatactcgtctgaagcttcaaaagatgcc
caatctcttcaaaccctagcttcgggtcctttctcttcttctctttcctcattgtcttgc
tcatctcgaaccctcccctccgatcaagactttcatttctttaagaatttcgacggtttc
aagctccccattgatcaaattgccaaaatatcggattctttgcttgaatccatcggctca
tcagctaaaacatggtgcgtcaataaagcgatcaaatttcctgacagaattgggagtata
gccgatgatgaagcttatgattggcttgttgatatcaacgacgaaatcttggaacgattt
gacgtttccgtggatgaatttcaaaatatccgaaagaaagaagaggaaacggggaggttt
atcgggtcggatccggaaattaatgggtttcaactggtttacgagaagaaaaagaagaaa
ggggatggtgcgttaatgggtgactcggttgctgagtcagtgagtgggaaggaaggtggg
tctccgagttattctggagtgaaggtgaagaaatgggcgttggctgcagggacttcgggg
aaagcgaaggttccttttcatataccaacaatacggaagccgcaggaagagtataatatt
cttgtgaataattcgaataagcctttcgaacatgtttggttgcaaagcagtgaggatggg
cagcgctttgttcatccactggagaagctgtctgttatggattttgtggataaagatata
gcagatattgagcctgtaaaaccaccctcaattgagtctaccccattcaagctggtggag
gaagtaaaagatttgaaggagttggcagccaaattacgcagtgtaaatgaatttgcggtt
gatttggagcataaccaatatagatcatttcaaggattgacttgtttgatacaaatttct
accagaaatgagaattttgttgtcgatactttgaagctacgaattcatattggcccgtat
cttcgggaattattcaaggatcccaccaagaaaaaggttatgcatggggcagaccgggat
attgtgtggcttcagcgggactttggcatatatatatgcaacctctttgacactggacag
gcctcgagggtcttgaaaatggaaagaaatagtttggaacatcttctgcaacacttttgt
ggagttactgctaacaaagaatatcagaatgcagattggaggttgcgtcctcttcctgct
gaaatgctcagatatgctagagaagacacacactttttactgtacatttatgatttaatg
agaatcaaattgctatccatgcctatggaacctgaacattgtgatgctgcgttggtagag
gtctacaagaaaagttctgatgtatgcatgcaactatacgagaaagagctgctgacagag
aattcatatctccacatatacgggttgcaggctgctggtttgaattctgagcagctatca
attgtctctgggctttatgaatggcgagaccatattgcacgttcagaggatgaaagtact
ggctatgtattgcctaacaaaatacttattgaaatcgccaagcagatgcctgtaactgct
ggcaagttgcgtcgactgttgaaatctagactcccatacgtggagcgaaatcttggtgca
gttgttagcatcatcaagcgttctatgcagaatgctgtctcatttgaagctgctgctcaa
caacctaaaatggggcgtgtgctacacgcatcggaagaatgtgtagcagttaatgacgga
gctgtagtcatacctcttgagactcgtacagacttaaaaattgcaaagaatagaactgaa
atcatagatggtggcatgaggggacttgatgggaaaactgcaaagcttgcttctcctcca
cgtaaagaattagtaacgactggaagcagtattcctggacctgacatggacaaaaaacaa
aaaagataccatatggagccagttgtgaacagtatctcaatgtctgcgagagaaggtctt
accgattcagggctgagtccaccttcgacaaaggctagtggagcaactgttcagattctg
aagagacctaactgtggctttggggcatttctagggaattctgccacgaagaaaaaatct
gatatagataaaaaaaaggaagagaacaagttggagcagatcagatctttggtgaatcta
cagttccactcatttttgggtatagaggagcagtcaaaactggtgacggaggaggcaact
aaagtatcacaaatttcacaacctgaagaacctcctcctgtggtagctaccgagttgaca
tctgaagatataataatgttggaagaaagttcaaataaagatgaatcaaatgatggtggt
ggtggcccaaaacccagtgatgcttctgttggtgatagtcccgtttgttactcctcggaa
acaagtaaaggtgacaatgaggagactatgtccctatctgatttatctacaagcttccaa
caatccacccagtcttttaaagtcaaggaatcaaaagaacaaagtggttctttgcaaata
aagccatttgattatgatgcagccaggaaacaggttaaatttggagtagacacagaggaa
aaaccaggaagtcaagtaaactctgcccgtaagaagaaaagttctgcagtcgggctgctg
caaatagatgatgggacgaagctgttccctcaagctagacgacgacaagcttttcctgca
tcagggaataggagtgcaactttccggccataa

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