Gossypium arboreum (tree cotton): 108465185
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Entry
108465185 CDS
T05776
Name
(RefSeq) protein HIRA-like isoform X1
KO
K11293
protein HIRA/HIR1
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108465185
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108465185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_CAF1B_HIR1
Hira
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
108465185
NCBI-ProteinID:
XP_017620997
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Position
8:141581045..141587308
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AA seq
1028 aa
AA seq
DB search
MIAEKPSWVRHEGMQIFSIDIQPGGLRFATGGGDHKVRVWNMESVGRNLGKDESTLRLLA
TLRDHFGSVNCVRWAKHGRFVASGSDDQAILIHERKPGSGTTEFGSGEPPDVENWKVAMT
LRGHTADVVDLNWSPDDSMLASGSLDNTIHVWNMSNGICTAVLRGHSSLVKGVAWDPIGS
FIASQSDDKTVIIWRTSDWSLAHRTEGHWAKSLGSTFFRRLGWSPCGHFITTTHGYQKPR
HSAPVLERGEWAATFDFLGHNAPVIVVKFNHSMFKRNSANSQEAKATPVGWVNGAAKIGG
KESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFGQSVVDLSWSPDGYSLFACSLDGT
VATFHFEVKELGHRLSDAELDELKRSRYGDVRGRQANLAESPAQLLLEAASAKQTTSKKV
ALDVQQNQIPVKSSLDLGVTNKSSKPPNNDGKKSGLSASDGLTKPVTSARVTSPVKQREY
RRADGRKRIIPEAVGVPTQQENISGGAQSQALDFPVASSDPRKNDNGIVPADGGLREATS
RGTVGKNFDLKECSGVTARATITDSLVIEKVSAGQDHSINVEQSGSLKPSGSTTGSTKSL
SIRVFDEKEGNDLTPVCLEACPKEHAVTDIVGAGNACMTKETAIICTRGGQTLWSDRISG
KVSVLAGNANFWAVGCEDGCLQVYTKCGRRALPTMMMGSAATFIDCDESWKLLLVTRKGS
LYLWDLLNRNCLLRDSLASLITLDHNSSTKGTIKVISVKLSKSGFPLVVLATRHAFLFDT
SLMCWLRVADDCFPASNFASSWNLGSTQTGELASLQVDVRKYLARKPGWSRVTDDGVQTR
AHLEAQLASSLALKSPNEYRQSLLSYIRFLAREADESRLREVCESFLGPPTGMASDSKNP
AWDAYVLGMKKHKLLREDILPAMASNRKVQRLLNEFMDLLSEYASIENNLDQRDPSPLTV
SQPEIDPMDSNPATCQTDTVEPTTDKKENPSPGIIDQMDSILSNQVNSGTKSSDQVNQAP
TIEDPAGS
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgattgctgagaaaccaagttgggttaggcatgaaggaatgcagattttctccattgat
attcaacctggtggtcttaggtttgctactggtggaggtgaccataaggttagagtatgg
aacatggaatctgttggcaggaatttgggaaaggatgaatctacattgaggcttcttgca
actttgcgtgatcatttcgggtcggtgaactgcgttaggtgggctaagcacggtcggttc
gttgcgtcagggtctgatgatcaagcgattctaattcatgagagaaagcctggttccggg
acgaccgagttcggtagtggggagcccccggatgttgagaactggaaagttgcgatgacg
ttgaggggacacactgcggatgtggtagatcttaattggtcgcctgatgactcgatgttg
gctagtgggagtttggacaacactatccacgtatggaatatgagtaacggtatctgcacg
gctgtgcttaggggtcattctagtctggttaaaggagttgcctgggatcccattgggtcc
ttcatagcgagccaatctgatgacaagaccgttattatatggcgaacaagtgactggagt
cttgcccatagaacagagggccactgggcaaaatcactgggatctacatttttcaggcgg
cttggatggtcaccttgtggtcatttcataactaccactcatggttaccaaaagccaagg
cattccgcacctgttcttgagagaggggaatgggctgcaacgtttgacttcttaggccac
aatgcaccggttatcgtagtgaagtttaatcactcaatgttcaaaagaaattcagccaat
tcgcaggaagcgaaagccactcctgttggctgggtgaacggagctgctaagattggcggg
aaagaatcacagccatataatgtaattgcaattgggagtcaggaccgcactataactgta
tggacaactgcaagtcctcgcccactctttgttgccaagcatttctttggtcaaagtgtt
gtggatttatcatggagccccgatggctattctctctttgcttgttcattggatggaact
gtggctactttccatttcgaagtgaaagaactgggccacaggttaagtgatgccgaactt
gatgagttaaagaggagtcgttatggtgatgtaagaggtcgacaggcaaatttggcagag
agcccggcacagttattgctcgaagctgcttcagccaagcaaaccactagtaagaaagta
gctttggatgttcagcagaatcagatacctgtaaaatcatctcttgacttgggggtaaca
aacaaaagttccaagccaccaaacaatgatggaaagaagagtgggctttccgctagtgat
ggattaactaaaccggtgacgtctgctcgggttactagccctgtaaaacaaagagaatac
agacgtgctgatggtagaaagagaatcattcccgaagccgtcggcgttcctactcagcag
gagaatattagcggcggtgctcagtctcaagcattagatttccctgttgcatcatctgat
ccccgaaaaaatgataacggcatagttcctgctgatggtggtttgagagaagctactagc
aggggaaccgttggcaaaaattttgacttaaaggagtgctcaggggttactgctcgggct
actattactgacagtctggttattgaaaaagtttctgctggccaagatcatagtatcaat
gtagaacagtctggaagcttgaaaccatcaggttccaccaccggctctaccaaatctctc
tcgattagggtatttgacgaaaaagaagggaatgatttgactccggtttgcttggaagcg
tgtcccaaggaacatgctgtgaccgacattgttggtgcgggaaatgcatgtatgactaaa
gaaacagcaatcatctgcacaagagggggtcaaacactttggtctgatcgtatatcagga
aaagtttcggtcttagccggaaatgcaaacttttgggctgtcggatgtgaagatgggtgt
ttacaggtttatacaaagtgtggaagacgtgcattgccgaccatgatgatgggatctgct
gcaacctttatagattgcgacgagagctggaaattattattggtgacgaggaaaggatct
ttgtatttatgggatctcctgaataggaattgtctcctccgtgattcattggcatctcta
atcactttggaccataactcgtctacaaaaggcacaatcaaagttatatcagtgaagttg
tcgaaatctggttttcctctcgttgttttggccactcggcatgcgtttctctttgacacg
agtctaatgtgttggctgagggtcgctgatgactgcttcccggcatcaaattttgctagt
tcttggaatttgggttcaactcagactggtgagctggcctcgctgcaggtggatgtaagg
aaatatttggccagaaaaccgggctggagtagggtaaccgatgatggagtacaaacgcgt
gctcatttagaagctcaattggcatcgtctttggctctgaaatccccaaacgaataccgc
cagagccttctttcctacatacgcttccttgcaagagaagcggatgagtctcgattacga
gaagtctgcgaaagttttcttggtccaccaaccggaatggcttccgattccaagaaccct
gcttgggatgcatatgtgctcggaatgaaaaagcacaaacttttaagagaagacattctt
ccagcaatggcatcgaataggaaagtccaacgattacttaacgagttcatggatctcctc
tccgaatatgcaagtatcgaaaataacttagaccaaagagacccatctccactgaccgta
tctcaaccagagattgacccgatggactccaaccctgcaacctgccaaacggatactgtt
gagccaacaacagataagaaggaaaacccgtcccccggtataatagatcaaatggattct
attctatcgaatcaagtaaactcgggtaccaaatcttccgatcaagtaaatcaagctcca
acaatagaagatcctgctggttcataa
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integrated database retrieval system