Gossypium arboreum (tree cotton): 108465360
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Entry
108465360 CDS
T05776
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108465360
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108465360
microRNA pathway
RISC loading complex
108465360
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
ResIII
Helicase_C
DEAD
PAZ
dsrm
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
108465360
NCBI-ProteinID:
XP_017621181
UniProt:
A0ABR0R150
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Position
1:95623343..95634213
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AA seq
1391 aa
AA seq
DB search
MEPVGMEMNISQQHSSDPLPFARSYQLEALEKAIKQNTIAYLETGSGKTLIAIMLLRRYA
YLVRKPSPFNAVFLVPQVVLVEQQADAVEMHTDLNVGKYWGDMEVDFWDDAKWKQEIDKY
EVLVMTPQILLNGLRHGFFNINMIKVLIIDECHHARRKHPYASIMTEFYHRQLEAGVSDL
PRIFGMTASPINTKGANSADGYWQKIHELETIMNSKVYTCVSESVLAQFVPFSTPKFKFY
QDMEIPYVLYACMVQELNVLKVKHECSLDNLDLEASAAESTRRKISKMHSALIHCLDELG
VWLALKAAEYLSCYESEFLMWGKLDVFGEKIVRSYTVDAFHAIRTCIPSDPDWTIVNDVK
ASVDAGFLTTKVLCLIESLSEYRVLKDIRCIIFVERIITAVVLQSLFSELLPKYGNWKTK
YIAGNNSGLQNRTRKKQNEIVEEFRKGIVNVIVATSILEEGLDVQACNLIIRFDPSPTVC
SFIQSRGRARMQNSDYLLMVKTGDFSTHSRLKNYLTSGDVMRKESLCHASDPCSPLSNDL
CDEEFYHVASTGAFMTPSSSVGLIYFYCSRLPTDRYFKPTLRCIIDKQMGICTLHLPKSS
PIQTVCVKGNFKSLKQKACFEACKQLHQFGALTDNLVPDIVVEENDAEEIGKESYNDDQP
IFFPPELVNQDSQESMTKYYCYLMELKQNFGYEIPVHNIILLVRSQLEMEAKSIELEVDR
GTLTVNLKYIGLIRLSSDQVILCRRFQIALFRVLMDHKAEKLTELLSDLTSGNNSEIDYL
LLPSNYMGQPVIDWLSISSILFSYEKVWKNHVNCNAGMIQTKSGLVCTCMIKNSLVSTPH
NGHTYIIDGLLNNINANSLLTLSDGGVMTYKEYYEQRHGIHLCFSRVSFLAGRHIFPVQN
HIQRCKKQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFLPSIMHRLESLLLATSLK
KMLLDHCVHNVAIPTMKVLEAITTKKCLESFHLESLETLGDSFLKYAVCQQLFKKHQNHH
EGLLSIRKDKMISNTTLCMLGCDKKLPGFIRDEPFDPKGWMVPGYNCGRYTLDEETLNTR
KIYVSGRRKLKSKKVADVVEALIGAYLSMGGEAAALLFLNWIGITIDFRNIPYERHFEVQ
AEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRH
LYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFREL
SLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVH
PVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKE
ILKSLKGANFC
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggagccagttggcatggagatgaacatttcccaacaacactcttctgatcctctccca
tttgccagaagctatcagcttgaagcactagagaaagctatcaagcaaaacacaatagct
tacttggaaactggctctggcaagacactgattgccatcatgcttcttcgcagatatgcc
taccttgttcgcaagccttcaccttttaatgctgtcttcttggttccccaagttgtcctg
gttgaacaacaagctgatgctgtggaaatgcatacggacttgaatgtgggcaagtattgg
ggagatatggaggttgacttttgggatgatgcgaaatggaagcaggaaattgataaatat
gaggtgcttgtgatgacacctcaaattttacttaatggattgaggcatggcttcttcaac
ataaacatgattaaggttttgataattgatgaatgccatcatgcccgaagaaagcaccct
tatgcttccattatgacagaattctatcatcggcaattagaagctggtgtatctgatctt
cctaggattttcgggatgactgcttcccctataaacacaaaaggggcaaactcagctgat
ggctattggcagaagatccatgaactagagacgattatgaattcaaaggtgtatacatgt
gtaagtgaatcagtgcttgctcagttcgttccattttcgactccaaagttcaagttttac
caagacatggaaattccatatgttttatatgcatgcatggtacaggaattgaatgttttg
aaagtaaagcatgaatgttcgttggacaatttggatcttgaagcttctgcagcagaatct
acgagaaggaaaatatcaaagatgcattcagctttaatacattgtttggacgagcttggt
gtctggttggctttaaaggctgcagagtacttgtcatgttatgaaagtgagtttcttatg
tgggggaaattggatgtctttggcgagaaaattgttaggagttacactgtggatgctttc
catgccattagaacatgcataccatctgatccagattggaccatcgttaatgatgttaaa
gccagtgtggatgctgggtttcttaccacaaaagttttatgccttattgaatctctttct
gaatacagggtgttgaaagacataaggtgtataatttttgtggagagaattataacagca
gttgtgcttcaatcactattcagtgaattgcttccgaagtacggtaactggaagactaaa
tacattgcaggaaataactctggattgcagaaccggactaggaaaaaacaaaatgaaatt
gtagaagaattccgaaaaggcattgtaaacgtaattgttgcaacttcgattcttgaggaa
ggcttggatgttcaagcatgcaacttaattatcagatttgatccttcgccgacagtttgt
agttttatacagtctcgaggacgtgctagaatgcagaattcagattatctattaatggtg
aagaccggggatttttctactcattctcgactgaagaactatcttactagtggagatgta
atgagaaaggaatctctgtgccatgcatctgatccttgttctcctctaagcaatgactta
tgtgatgaagagttctaccatgttgcaagtacaggggcatttatgactcctagttcaagt
gttggtttgatatacttctattgctcacgcctccctacagacagatattttaaacctact
ctgaggtgtatcatagacaagcaaatggggatttgcaccctccatctacccaagagttcc
cctatacaaactgtttgtgttaagggaaacttcaaaagcctaaagcagaaggcatgcttt
gaagcatgcaagcaactccatcaatttggtgctttgacagataatcttgtgcctgatatt
gttgtggaagaaaatgatgctgaagaaattggaaaggaatcctataatgatgatcaaccg
attttttttcctcctgaactggtgaatcaagattcacaggagtccatgacaaaatactac
tgctacttaatggagttgaagcagaactttggttatgagattcctgttcataacatcata
ctccttgtcaggagtcagcttgaaatggaagcaaaaagtattgagttagaagttgatagg
ggcactctgacagttaacttgaaatatattgggctgatacgtcttagttctgaccaggtt
atcttgtgtagaaggtttcagattgctctttttcgagttcttatggatcataaagcagaa
aagttgacagagttgttatctgaccttacgtcagggaacaattctgaaatcgattatctt
cttctcccatcaaattacatgggccaacccgtgattgattggttgtcaatttcttccatc
ttattttcttatgagaaggtctggaagaatcatgtgaactgcaatgctggcatgatacag
accaaaagtggtctggtgtgcacttgcatgataaaaaattcgttggtctctactcctcat
aatggtcacacatatattattgacggtcttttaaataatataaatgcaaattcacttttg
acactgagtgatggaggagtaatgacctacaaggaatattatgaacaacgacatggtatc
catttatgttttagtcgagtctctttccttgctgggcgacacattttccccgtgcaaaat
cacattcaaaggtgcaaaaaacagaaagagaaagaatccagtaacgcatttgtagaattg
cctcctgagctttgtgatgtaataatgtctcccatatcgattagcacattttattctttc
acatttcttccatcaatcatgcatcgactcgagtctttactccttgctaccagcttgaaa
aagatgcttctcgatcattgtgtccataatgttgctattccaaccatgaaggttttggag
gcaattaccacaaaaaagtgcctggaaagttttcatttggaatcactggagactcttggt
gattcttttttgaagtatgctgtttgtcaacagctattcaaaaaacatcagaatcatcat
gagggccttcttagtattaggaaggacaaaatgatttcaaatacaaccctttgcatgctg
ggatgtgacaagaaacttccgggatttatccgtgatgagcctttcgatcccaaaggttgg
atggttcctggttataattgtggaagatatacattagatgaggagacattgaatacaaga
aaaatatatgttagtgggagaaggaagctgaagagtaagaaggttgctgatgttgttgag
gctcttatcggtgcatatcttagcatgggaggtgaagctgctgcattattatttttgaat
tggattggtataactattgattttagaaatataccgtacgaaagacatttcgaagtgcag
gctgaaaagtttgttaatgtccaacatttagagtctcttcttaactattcatttcaagac
ccttcttttttagtggaagcactaacacatggttcttacatgcttgctgaaattccagga
tgttatcagcggctggaatttctaggggactccgttttagattatctcatcactcggcat
ttatataataattatcctgggatctcaccaggattattaacggatctgaggtcagcatct
gttaacaacaattgctatgcattatcagctgttaaggctggattgcataagcacattctc
caaagttcacagaagctttacaagcatataaaagaaactgttgaaagttttcgggaatta
tcgttggattgcactttcggttgggaatctgaaaaatctttccccaaggtactgggtgat
gtgatggagtcacttgctggggctatatttgttgattcaggatacaacaaggaaactgta
ttccggagtatcaggccactgttggagcccctgattactctagagactatgacggtccac
cccgtgaaggagttgaatgaactttgtcaaaagaagcattatgaacaaagaaaacccatt
gtttcacatgacaatggggtttcttctgttaccatagaggttgaagcaaatggcgaggta
ttaaagcacacatcaacagcttctgataggaagatggccaagaaactggcttccaaagaa
attttgaagtccctaaagggagccaatttttgctag
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