Gossypium arboreum (tree cotton): 108465534
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Entry
108465534 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108465534 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108465534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108465534
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108465534
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108465534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
108465534
NCBI-ProteinID:
XP_017621361
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All DBs
Position
13:88609325..88617758
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AA seq
885 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKISASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKMRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDKVES
LEDLVAIGPLSKGGPILKTSLAASMSQLPQGGSSQEHVEDTASQDSNSDIAKTPPPKSST
INSSAAATPAGSHVTPAPLNLPPHSLSGASSPSVLPDSNSAQGLLESTGTNPPPVNLSNA
TKEEDITNFPGRRPSPSLADTGVRGIGRGLSGQPSSTIPLVSGSVASGNGALGAVPPASD
MAKRNILGVDERLGNSSMGQSLTSPISNRMILPQAAKSNDGNAPVDSSNPNESAGLPGRA
FSPSMVSGMQWRPGSSFQNQNELVQFRGRTEIAPDIREKFLQRFQQVQQQGHSNLLSSMS
PLAGGNHNQFSAQQQSPLMQQFNPQSSCFSIPPGLGHGGQAPGLNSVTSASLQQQPNSIH
QQSGQQALATSVPKDADVGVAKVEEQQPQSLPDGSSSEAIQTSGLAKNLMNEDDLKAPYA
IDSPAAVSGSLTEPARNIRDIDLSPGQPLQYNQSSSGLGVIGRRSVSDLGAIGDSLSGST
NSGGMHDQLYNMQMLEAAYYKIPQPKDSERVRSYTPKHPAVTPASYPQVQAPIVNNPAFW
ERISMDGYGTGTDTLFVAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIAT
DEFEQGTYVYFDFHVANDDHQHGWCQRIKTEFIFEYNYLEDELIV
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagctacaaggagagatcgatcgtgttctcaagaaagtccaagaa
ggtgtcgatgtgttcgatagcatctggaacaaggtttatgatactgataatgcgaatcag
aaggagaaatttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtacagggac
cagatcaagacttggattcaatcgagcgagatcaaggataagaaaattagtgcctcttat
gagcaggccctggtggatgctcggaagcaaattgagcgtgaaatggaaagatttaagatc
tgtgagaaggagactaagacaaaagcattttctaaagaaggcttgggccaacaacccaaa
actgatccgaaggagaaggctaagtcagagacaagggattggttgaacaatgtggttgga
gagttagaatcccagattgatagttttgaagctgagattgaggggctgtctgtgaagaaa
ggaaagatgagaccacctagactgacacacttggagacatcaattacacgacacaaagct
catataatgaagttagaattgattttgagactattggacaatgatgaattgagtccagag
caagtcaatgacgtgaaagacttcttggatgattatgtggaacgaaatcaggaggacttt
gatgaatttgatgatgttgatgagctctacagctcattacctctagacaaggtggagtct
cttgaagatctagttgcaattggcccactttccaagggtggtccaatcttgaagacatct
ttggcagcatcaatgtctcaattgcctcagggtggttcctctcaggagcatgttgaagat
acagcttcccaggatagtaattctgatatagcaaagaccccacctccaaaaagtagtaca
attaattcttctgctgcagcaacaccagctgggagccatgtaacccctgctccactgaat
cttccaccacatagtttgtctggtgcttcatctccttcagttcttccagattcaaattct
gcccaaggcctcttggaaagcactggcaccaatcctcctcctgtaaatttatctaatgct
acaaaggaagaagatatcacaaacttccctggccgtaggccatctccatcccttgctgat
actggagtacgaggcattggtagaggtctatccggtcagccttcatctactatacccctt
gtttctggaagtgtggcttctggtaacggggcccttggtgctgtccctcctgcctctgac
atggcaaaaagaaatattttgggagttgatgagagacttgggaatagtagcatggggcaa
tctttgacatcacctattagtaacagaatgatcttgcctcaggcagccaagtcaaatgat
ggaaatgcacctgttgattctagtaatcctaacgagtctgctggactacctggcagagca
ttttctccttcaatggtttctggcatgcagtggaggcctggaagttcgtttcagaatcaa
aatgagctggtgcagtttcgtggaagaactgagatagctcctgatataagggaaaagttt
ttgcaacggttccagcaagtgcagcagcaaggccatagcaacctgcttagcagcatgtct
cctcttgctggaggaaatcataatcagttttctgcacaacaacaaagccctctcatgcag
cagttcaatcctcaaagctcgtgtttctcaatcccacctggtctgggacatggtggccaa
gcacctggtcttaatagtgttacctctgcgagcttacagcagcaaccaaactcaatccac
cagcagtctggtcagcaggcattggcaacaagtgttcctaaggatgctgatgttggcgtt
gcaaaagttgaggaacaacaaccgcagagtttacctgatggttcaagttctgaagctatt
caaacttctgggcttgccaaaaatctcatgaatgaagatgatttgaaagctccatatgca
attgattctcctgctgctgtctcaggctctttgacggaacctgctcgaaatattagggat
attgatctttctcctggacaacccttacaatataaccaatcttctagtggtcttggtgtt
attggccggagaagtgtttccgatcttggtgccattggtgacagcctcagtggttcaaca
aattctggaggaatgcatgatcaattgtacaatatgcagatgcttgaggctgcatattac
aaaattccccaacctaaagactcagaacgagtgaggagctatactccaaagcaccctgcg
gtaacacctgctagttaccctcaagttcaggcacccatagtgaataatcctgccttctgg
gaacgcataagcatggatggatatggcactggcactgatacactgtttgttgcattttat
tatcaacagaacacttatcaacaatatctagctgcaaaggagctgaagaagcaatcttgg
agataccatagaaaatacaacacatggtttcagcggcatgaggaaccaaaaattgctact
gatgaatttgaacagggaacctatgtatactttgattttcacgtggcaaatgatgaccac
caacatggatggtgtcagagaatcaagactgagttcatctttgagtataactatctggaa
gatgaacttatagtatag
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