Gossypium arboreum (tree cotton): 108466386
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Entry
108466386 CDS
T05776
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108466386
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108466386
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CBM27
CarbopepD_reg_2
RhgB_N
Motif
Other DBs
NCBI-GeneID:
108466386
NCBI-ProteinID:
XP_017622199
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Position
2:4785441..4790134
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AA seq
679 aa
AA seq
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MEKVVNMSHWRRKLVLWMVMVIQLSLFLSVFSTEIHARKFLKDNDINTNDVRLHISDRQV
IIDNGLAEVTIENPSGYLIGIKYKKMQNVLERRNHISNRGYWDIVWDGDSYDKLETKHVE
VITQTNDIVELSFTKTWNSKNHGKTIPLNIQKRYIVRRGISGVYMYGIFERQKDFPKAHM
YQIRIAFKLKEDKFRFMALSNTIQRVMPRSEDRVKGHSKPLDFKEAVLLTNPSNPKLKGE
VDDKYQYSIENKDNKLNGWISDHDSIGFWIMTPSNEFRSGGPHKQDLTSHVGPTALSMFV
STHYTGTEIDTFYKEGEAWKKVFGPVLIYLNSASLKDDDHRKILWNDAKRQLSEEIESWP
YNFTRSEDFPHSQQRGQVNGQLLVQDRYMDKQLMQAKSAFVGLAPPGEADSWQKEGKGYQ
FWTQTDKIGRFNIKNVRPGVYNLYAWVHGFIGSYKLDLNITIQPGNKIELDTLIYDPPRN
GPTLWEIGIPDRTAAEFFIPEPYPQYVNSITNDGADKFRQYGLWDRYSDIYRDSDLVYTV
GTSNYSKDWFFAHVPRKIGDDWYRPTTWQIKYNLQDVNNRGTYTLQMAIAAASFAEVEVR
FNDPNSDRPHFTTRRIGYDNAVPRHGIHGLYRLYSIEVPGYRFLKGSNTIYLTQTRSDNS
FEAVMYDYIRLEGPNSLNN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtggtaaacatgagccattggagaagaaaacttgttttgtggatggtaatg
gtgattcaattatcactgtttctctctgtgttctctactgaaatccatgccagaaaattc
ctaaaggacaacgacattaacactaatgatgtccggttacacataagtgatcgccaagtg
attattgataatggacttgctgaagtcactatcgagaatccatctggttacttgatagga
attaaatataaaaagatgcaaaatgtacttgaaaggagaaaccacatttctaatagaggg
tactgggacattgtgtgggatggtgattcctatgataaactagaaaccaaacacgtcgag
gtcataacacaaactaatgacattgtagagctttcctttaccaaaacatggaattccaaa
aaccatggcaagacaattcccttgaacatacaaaaaaggtacatagtccggcgcggcatc
tcaggggtctacatgtacggcattttcgagcgccagaaagattttcccaaagctcatatg
taccaaataaggattgctttcaagctcaaggaagacaagttccgattcatggcgttatcg
aacacgatacaacgagtcatgcctcgaagtgaagatcgggtcaaaggtcatagtaagcct
cttgacttcaaagaagctgttttactgacaaatccatcaaatccaaaacttaaaggagag
gttgacgataagtaccaatattctattgagaataaagataacaagcttaacggttggata
tcagaccacgattccattggtttttggataatgacccctagtaatgagtttcgatcaggc
ggtccgcataaacaggatcttacttctcatgttggtccgactgctctttcgatgtttgtt
agtacacattataccgggactgaaatcgacacattctataaggaaggagaggcttggaaa
aaagtttttggtccggttttgatctatcttaattctgcttctttaaaggacgatgatcac
cgaaagatcctgtggaatgatgctaaaagacagttgagtgaagaaattgaaagttggcct
tacaatttcactcgatcagaagattttcctcactctcaacaacgaggacaagttaatgga
caactgctagtgcaagaccggtacatggataagcaattaatgcaggcaaaatctgccttt
gtggggttggccccccctggagaagctgattcatggcaaaaagaaggaaagggctaccaa
ttttggacccaaaccgacaagattggtcgtttcaacataaaaaatgtgcgaccaggggtg
tataatttgtatgcttgggtccatggtttcattggaagctacaaattagatctcaatatc
actatccaaccaggaaataagatcgaattggatacacttatatatgatccaccaagaaat
ggaccaacattgtgggaaattgggattccagacaggacagcggccgagttcttcatacct
gaaccatacccacaatatgtcaattcaattaccaatgatggtgcagacaaattcaggcaa
tatggattgtgggatcgatactcggatatttatcgtgatagtgaccttgtctacactgtg
ggtacaagcaactattcaaaggattggttctttgctcatgttccaaggaaaatcggggac
gattggtaccgaccaacaacatggcaaatcaaatacaatctccaagatgtaaacaataga
ggaacctacactctccaaatggcaatagcagcagcttcttttgcagaagtagaggttcga
ttcaacgatccaaattccgatcgacctcattttacaaccagaagaatcggttacgacaac
gccgtaccaaggcacgggattcatggattgtacagattgtacagcattgaagtacctgga
tatagatttcttaaagggagcaacacaatatatcttactcagacaagaagtgacaactcc
tttgaagctgttatgtatgattacattcggttagaagggcctaatagtttaaacaattaa
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