Gossypium arboreum (tree cotton): 108466555
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Entry
108466555 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108466555 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108466555
09122 Translation
03013 Nucleocytoplasmic transport
108466555
03015 mRNA surveillance pathway
108466555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108466555
03041 Spliceosome [BR:
gab03041
]
108466555
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108466555
Spliceosome [BR:
gab03041
]
Complex C
Other components
EJC/TREX
108466555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
108466555
NCBI-ProteinID:
XP_052880028
LinkDB
All DBs
Position
2:7559621..7564569
Genome browser
AA seq
726 aa
AA seq
DB search
MSSKYQILDNRPIDQWKVTELKEELKRRKLTTRGLKEELVRRLDEALRLERENAETEEDN
GFNSDPQPTDEGGIEKAMAVIVETVKDDVDHSSSEIKKESGVKVHVDINESAAALGHEGV
QGSDSLVEKELVSETTTIQTEIMVTKNVVSEVPSTEKESSGQNENVYTDIKVESEDPKLQ
FETDDPKPEVENDDPKGQLQGSNPQLEGDDDSKPQLDIEDSKVQLENEGLKVLHEDDVHD
SSAPNIQVSEVSPDLGLQVKSDSISTDSVSNNEKIELKDNILADNVKLDLDVVKPEMVEP
SSSNVVPISGESHPMDVEDLPENKAPVDGRDGKNVTNVDMGNKNDSAETTYSEKLNLDRS
SGDDSMEEDMLESKQIDSKCSADEMGDKSENNGAPIIKEKSPLGDVRDDLSVDKKDTLVE
NKSRSFVPAEKRKLHDQEPVGNNELAKRRKWNSDNIEVTEHQGSNLTAISTPKDTPQPAA
LRRNFSRSDSTASEGAQKERVVPPSQNAPTTSLRIDHFLRPFTLKAVQELLGKTGTVTSF
WMDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVANFVDPQEVKTRLDAPPQTP
TTPGTSGSTAPQAQPTSHPQPSLRQQVSRQQFPPPSALPPPPPLPNPPPVRERLPLPPPP
PEKPDPPIVTLDDLFWKTKATPRIYYLPLSDEQVAAKQAAHGRNIKLSAGFALLEGIVPA
MQGGVQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaatatcaaatacttgacaatagaccaattgatcaatggaaggttacagag
ttgaaagaagaacttaagaggcggaaactgacaactcggggcttgaaagaggagttggta
agacgtttggatgaggcccttagattggaaagggaaaatgctgaaactgaggaagataat
ggttttaattctgatccccagcctacagatgagggagggattgaaaaggcaatggcagtt
attgttgagacagttaaagatgatgtggatcatagtagcagtgagatcaagaaggagagt
ggggtgaaggttcatgttgacattaatgagagtgcagctgctttgggtcatgaaggagtt
caaggaagcgacagcttggtggaaaaggagcttgtttctgaaaccactactattcagact
gagataatggttaccaagaatgtggtatctgaggtaccatctactgagaaagagagctca
gggcaaaatgagaatgtgtatactgatatcaaagtggagagtgaggatcctaagctccag
ttcgagactgatgatccaaagcctgaggtggagaatgatgatccaaagggccaactgcag
ggttcaaatcctcagctggagggtgatgatgattcgaagcctcagctggacattgaagat
tcgaaggtgcagctggagaacgagggtttgaaggttctacacgaggatgacgtgcatgat
tcttctgctccgaacatccaggtatctgaggtcagccctgatttagggttgcaagtaaaa
tctgattctatatctactgattctgtctcaaataatgaaaagattgaattaaaggataat
atacttgctgataatgtcaaattagacttagatgttgtaaagccagagatggtggaacca
tcatccagcaatgttgtcccaattagtggtgaatcacatccaatggatgttgaagatctg
cctgagaacaaggcacctgttgatgggagagatggcaagaatgttacaaatgtagacatg
ggtaataaaaatgacagtgctgagacaacctactcggaaaaattaaatttggatagaagt
tctggtgatgactctatggaggaggatatgcttgagagtaaacaaattgattcaaaatgt
agtgctgatgaaatgggagataagagtgagaataatggagcacctattatcaaggagaaa
agtcctcttggtgatgtaagagatgatttatctgtagataaaaaggacaccttggttgag
aataagagccggtcttttgttcctgctgagaaaagaaagcttcatgatcaggaacctgtt
ggtaacaatgagcttgcaaaacggcgcaaatggaattctgacaatatagaagttacagaa
catcaaggctctaatcttacagccatcagcacacctaaagacacccctcagcctgctgct
ttgagacgtaacttctctagatcagactcaacagcaagtgaaggtgcacaaaaggaacga
gttgttcccccttctcaaaatgctcctaccacgtccctcagaattgatcattttctgcgc
ccttttaccttgaaagctgtacaagaacttctagggaaaactgggactgtaactagcttc
tggatggaccacattaagacccattgctatgttacatattcatctgtagaagaagcaata
gagacacgaaatgctgtttacaaccttcaatggccacctaatggtggccgtctattggtg
gccaactttgttgatccccaggaagttaaaactcggcttgatgctccaccacagactcca
actactcctgggacttctggttctactgctcctcaagctcaacctacttctcatccccag
ccatctttgcgtcagcaggtttctaggcagcagtttccaccaccttctgcacttcctcca
ccaccacctttgcctaaccctccaccagttagagaacgtctccctcttccgccgccacct
ccagagaaaccagatcctcccattgtcactctggatgatctattttggaaaaccaaagca
actcctcggatctactatttgcctttgtcagatgagcaagttgcagccaagcaagcagca
catggcagaaacatcaagctgtctgcaggttttgctttattggaaggaatagttccagcc
atgcaggggggagtccagtga
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