Gossypium arboreum (tree cotton): 108466606
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Entry
108466606 CDS
T05776
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108466606
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108466606
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108466606
NCBI-ProteinID:
XP_017622480
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Position
2:complement(64837011..64838942)
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AA seq
406 aa
AA seq
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MAIPLSLFLLVFSFLAPSIFSASPVQDPEQVVRQVNESIRNATAARRKLGFLSCGTGNPI
DDCWRCDPKWAKNRKRLADCGIGFGKRAIGGRNGKFYVVTDPSDRDPVNPKPGTLRHAVI
QDKPLWIIFARDMVIKLKAELLMNSFKTIDGRGVSVHIAYGQCITIQYATNIIIHGINIH
DCKRGGNLYVRDSPTHYGWRTTSDGDGVSIFGSSNVWVDHCSLSNCNDGLIDAIHGSSAI
TISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWIMYAIGGSANPTINSQGNRFLAPDKMNNKEVTKRENTPRKKWKKWNWRSRGDLMLNG
AFFTPSGTGALSSYAKASSLSARPSSLVSSVTAGAGALVCRKGRRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccattgtccctcttcctactggtgttttctttcttggctccctccattttc
tcggcctctccagttcaagaccctgagcaagttgttcgacaagtcaatgagagtataagg
aatgctacggcagctaggaggaaactgggatttctctcatgtggaaccgggaaccccatt
gacgactgctggcggtgcgaccctaaatgggcaaagaaccgtaagaggctagccgactgc
ggcattgggttcggtaagcgtgccattggtggccggaacggaaaattttatgtggtgacg
gaccccagtgaccgtgatccagtgaatcccaaacccggtactcttaggcatgcagttatc
caagataaacctttgtggatcatatttgctcgtgacatggtgatcaaactgaaggctgaa
ttgctgatgaactcattcaagacgatcgacggccgaggtgtcagcgtccacatcgcctat
gggcaatgcattactatacagtacgcgaccaacattataattcatgggattaacatacat
gattgcaagaggggagggaatctttacgtgagggattctcctacgcattatgggtggagg
actacatcggacggtgacggggtatcgatatttgggagcagcaacgtttgggtggaccat
tgctccttgtctaattgcaatgacgggcttatcgatgccatccacggatccagcgccatc
accatttctaacaattacatgacacatcatgataaagtcatgctcctaggtcacagtgac
tcttacacccaagacaagaacatgcaagtcaccattgccttcaaccattttggagaaggg
cttgtgcagagaatgcctagatgcaggcatggatattttcacgtggtgaacaatgattac
acgcattggataatgtatgcaatcggtggcagtgcaaatccgacgatcaacagccagggg
aacagatttcttgcaccagataaaatgaataacaaagaggtgactaaacgagagaatacg
ccgcggaaaaaatggaagaaatggaattggaggtcaagaggggatttgatgttaaatgga
gcattcttcacaccttccggcaccggagccttgtcgagttatgcgaaggcgtcgagcctg
agtgcaagaccgtcttcgcttgtcagctcagtcacagcaggggcgggtgcactggtttgc
aggaagggccgacgttgctag
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