Gossypium arboreum (tree cotton): 108466899
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Entry
108466899 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108466899
KO
K11790
denticleless
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108466899
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108466899
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Beta-prop_Vps41
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
108466899
NCBI-ProteinID:
XP_017622746
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All DBs
Position
7:1470160..1475194
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AA seq
510 aa
AA seq
DB search
MDSSKLKSCFHGISSRELSSFRVRKRPFIDELASDFTEIGAVAIEHDADPTPPLAISFCK
ASKNSHIFAVSDEAGYVSLFDSRRKLSSAASHQKNAEKARISDWVAHENAIFDVCWIKED
SHILTASGDQTIKVWDALEKKCIGVLMLHTGSVKCLSSHPTNSDLVVSGSRDGSFAIWDL
RCKINSRSRYDGVCLTATSMVKGAHASSQARRGRHGKAAAASITSLVYLKDEVSIATAGA
ADSVVKFWDTRNLKSHVTRACSKPESSSKKGISSLSQDSKGVFLTASCMDNRVYLYNVLQ
LDKGPMQTFSGCQIESFYVKAAISPDADHILSGSSNGNAHIWKVNKPQAEPIILKNHHGE
VTAVDWCPSEIGKIATTADDFTVRIWNIENKYCSTSRSPSSIRRRVNAIPSTESRKVLMD
DNEESGSSDSPNEPLHQIQVSSPSHPITTTFLLSTPEGHKKKLLASISDTNEPSSFEQTP
EPAMKSPSSVLNPPSSLKRKTIKDYFVAAP
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggattcctccaaattaaaatcttgtttccatggcatcagttccagagaactcagtagc
tttcgagttagaaaacgaccatttattgatgaattagcttcggattttactgaaatcggc
gctgtcgccattgaacacgatgctgacccgactcctccgttggccatctctttttgcaag
gcgagtaaaaattctcatatttttgcggtatctgatgaggctggatatgtaagcttgttt
gattctcgtaggaagctttcttccgctgcatctcaccagaaaaatgcagaaaaagcaaga
atcagtgattgggttgctcatgaaaatgccatatttgatgtatgctggataaaggaagat
agtcacattttaacagcttcaggagatcaaactataaaagtatgggatgctctggaaaag
aaatgcattggagtcttgatgttgcacacaggaagtgtaaaatgtttgagttctcatcca
acaaattctgatcttgttgtttctggttcgagagatgggtcctttgctatttgggatcta
agatgcaagattaactcccgaagtagatatgatggggtttgccttacagcaacttccatg
gtcaaaggagctcatgcttcatctcaagcaaggcggggtaggcatggcaaggctgctgct
gcaagcattacatcacttgtttatctcaaagacgaagtttccattgctacagctggagca
gcagacagcgttgtgaagttctgggataccagaaatctgaaatctcatgtcactcgggca
tgttccaagccagagtcttcatctaaaaagggtatatctagcttgtctcaggattcgaaa
ggagtgttcctcacagcatcatgcatggacaatagagtatacttgtataatgtacttcag
cttgataagggacctatgcaaactttctctggatgccaaatagagtctttttatgtgaag
gcagcaatcagtccagatgcagatcacatactaagtggttccagtaatggaaatgctcat
atatggaaggtaaacaagcctcaagcggagcctatcatcttgaaaaatcatcacggcgaa
gtcactgcagtagattggtgcccatctgagataggaaagatagcaactactgcagatgat
ttcacggtaaggatatggaacattgaaaacaagtattgctccacctcaagatcaccatct
agcatccgaagaagagtaaatgcgattccaagcacagaaagtagaaaagttttgatggat
gataatgaagaaagcggcagctcagattcaccaaatgaaccattacaccaaatccaagtg
agctcaccatcacacccaataaccactacatttttgcttagtacaccagaagggcataag
aaaaagttattagcatcaatttcagacaccaatgaaccaagcagctttgaacaaacacct
gaacctgcaatgaaaagcccatcttcagttttaaacccaccttcttccttgaaaagaaaa
accattaaagattactttgtagcagctccatga
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