Gossypium arboreum (tree cotton): 108466974
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Entry
108466974 CDS
T05776
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108466974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108466974
Enzymes [BR:
gab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108466974
DNA repair and recombination proteins [BR:
gab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108466974
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
MNM1_beta
Motif
Other DBs
NCBI-GeneID:
108466974
NCBI-ProteinID:
XP_017622883
UniProt:
A0ABR0QUW6
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Position
2:complement(20517825..20533863)
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AA seq
533 aa
AA seq
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MNQALQLGFRTFINLSSFPVDPRKLGIGRLAPLRGKVMGSKRRSFSNPSSIADQNIDKKL
RDAIDNDNYTISDNPILKDIKDDPSKIEAMTIQQLRTALRTAGIPPKGLKRELVSALQSY
LAKEIDGESSLLADKQDPSNSDKRISMMMETKSVEDQVQDANCFSKVSEVQQSRRTVKQL
QIKGKTVDVNAKIVATEQKKSACASGRMTSLTKKKASSDVDSKYVSAKNRVTLPVNQSEP
WTILAHKKPQKGWIAYNPRTMRRSLPIENTKFVKILSWNVNGLRALLKLEGFSAMELAKQ
ENFDVLCLQETKLQEKDVESIKQSLIEGYENSFWTCSNTRLGYSGTAIISRIKPLSVRYG
LGISDHDSEGRVVTAEFDSFYLLSVYVPNSGDGLRRLAYRITEWDPSLGNYIKELEKSKP
VILTGDLNCAHEEIDIYNPAGNRRSAGFTIEERQSFSTNFLSRGFVDTFRKQNPDVVGYT
YWGYRHGARKGNKGWRLDYFLVSEAIADDVHDSFILPDVIGSDHCPIGLVLKL
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagcattgcaactaggttttagaactttcataaatctttcaagctttccggtg
gaccctaggaaattgggtattggaagattggctcctttaagaggcaaagtaatggggtct
aagagaagaagcttttcgaatccatcctctattgctgaccaaaacattgataaaaagctc
agagatgcaatagacaacgacaactacaccatttctgataaccctattctcaaggatatc
aaggatgatccaagcaaaatcgaggcaatgacgattcaacaactcagaacggcattgagg
actgctgggatccctcccaaaggtttgaaacgtgagcttgtatctgctttacagtcttat
ttggccaaggaaatagatggtgaaagttctcttttagcagataaacaagatccctccaat
tctgataaaagaatatctatgatgatggagacaaaatcagtagaggaccaagttcaggat
gctaactgtttttctaaggtttccgaggttcaacagagcaggagaactgtaaaacagttg
caaattaagggcaaaacggttgatgttaatgctaaaattgtcgccactgagcagaagaaa
tctgcttgtgcttcaggtaggatgacttctctgacaaagaagaaagcatcttcagatgtt
gatagcaaatatgttagtgccaaaaatagagttactcttcctgtaaatcaaagtgaacca
tggactattttggcccataagaagcctcaaaaagggtggatagcatataatcctagaacc
atgagacgttcacttcctatagagaatacaaagtttgtcaagattctttcgtggaatgtc
aatgggcttagagcattgctgaaactagagggattctctgctatggaacttgccaaacag
gaaaactttgatgtattgtgtttgcaagaaactaagcttcaggagaaggatgttgaatca
atcaaacagtctcttatagaaggatacgagaacagcttttggacttgcagcaatacaaga
cttggttattctggaacagcaataatatctcggataaagccactttcagtcagatatggc
ctaggcatatcagatcatgatagtgaaggacgggttgtgacagcagagttcgattctttt
tatttattaagtgtctatgttcctaattctggtgatggcttgagaaggctggcatatagg
attacagaatgggatccatctcttggtaattacataaaagaactggaaaagtcaaagcca
gttattttgacaggggatttgaattgtgcgcatgaagagatagacatttataatccggct
ggaaacagaaggagtgctgggtttacaattgaagaaaggcagtcttttagcacaaatttc
ttatccaggggctttgttgacacctttagaaagcagaatccagatgttgttgggtatact
tactggggttatcggcatggtgcacgcaaaggtaataaaggatggaggcttgactacttc
cttgtctcagaagccatagctgatgatgttcatgattcattcattcttcctgatgtcatt
ggtagtgatcactgccctattggacttgtactcaagctctag
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