Gossypium arboreum (tree cotton): 108467197
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Entry
108467197 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108467197 isoform X1
KO
K06100
symplekin
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108467197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108467197
03019 Messenger RNA biogenesis [BR:
gab03019
]
108467197
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108467197
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108467197
U7-dependent histone pre-mRNA processing factors
108467197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
108467197
NCBI-ProteinID:
XP_017623251
LinkDB
All DBs
Position
2:complement(114815678..114825977)
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AA seq
1337 aa
AA seq
DB search
MVGIMNPVSREKLASLSSSVKFAIDLGSKLELCRQLKHDLLEEDAADLSEFLPRIFDLYS
DPSGPVRKFATEIIGEIGVKHLEFVAEIAPFLITVVEDATPAVARQSIACSIDLFRHTLE
KIAIRGLYSSELDSDLESSWSWMLKLKEKIYSIAFQPGSGGIRLVALKFVEAVILLYTPN
PNGSPEPPPNEGTSIEFNITWLRGGHPLLNVGDLSIEASQRLVLLLDQLRFPAVKSLTTS
VIVVIINSLSAIAKKRPAYYGRILPVLLSLDPPSFVIKGVHVYGAHHALKNALLSCLKCT
HPSAAPWRERILGALKEMKAGGLADLALNQVHKINGSVEEEKDDSLLIKEEKPLTKAYDA
AGSNVGRKRSGTEDSSDLAEKDEVSGKRVKATPSVSEESTKELNTNITVSQGDISSTQSS
TRKVDVDTGPVQQLVGMFGALVAQGEKAVGSLGILISNISADLLAEVVMANMCNLPPTHP
HTDTDDELLEDMCIVGSDTQAKYPPSFLADVISLSSTFPPIASMLNSQQSVPNKVVIQKT
EEEEEVDVVADPNSAVAYAGMAREDENALLATDLPVSSNIVLPGMKIDLPTPSDIHDTGN
LESGIPGLDSSFRNDGLSDTQAASSLVSTDIEDASQEQATSFGGKSPLHVLPSISIDRSE
ELSPKAAVTDSSSMVSSTATSVVSSCPFVLPKMSAPVVNLSEDQKDDVQKLAFVRIVEAY
KQIAVAGGSQVRSSLLAYLGVELPSELELQKVLREHILSDYINHEGHELTLRVLYRLFGK
AEDESDFLSCTTAASAYETFLLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLGCL
CSPGISEKAEESQSGDRVTQGLSTVWSLILLRPPIRDVCLKIALQSAVHHLEEVRMKAIR
LVANKLYPLQSIAQQIEKFAREMLLSVVNVDATERTGAEGLISESHKDSDLEKSSNEHPS
MSSCSKDISADVHQSETSHSGSSPSVPEAQRCMSLYFALCTKKHSLFGRIFIIYSSASKE
VKQAIHRHIPILVRTMGLSSDLLEIISDPPSGSENLLMQVLQTLTEGTVPSAELIFTIKK
LFDSKLKDVEILVPVLPFLQGDEVLLLFPHLVNLPLDKFQAALTRLLQGSAHSGPVLTPA
EVLIAIHGIDPERDGIPLKKVTDACNACFEQRHIFTQQVLAKVLNQLVEQIPLPLLFMRT
VLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQL
ENALNRTAALKAPLVAHASQQNIRNSLPRSVLAVLGLAPDTQSSSQAQTSQAHTGDTSNS
EKDAAVTEKSKESSSAS
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggtagggatcatgaatccggtttcgagagaaaagctcgcgagtttatccagctcagtg
aagttcgccattgacttaggttccaagctagagctttgtcgtcaactaaagcatgattta
ttggaggaagacgctgctgatttgtccgagttccttcctcgtatcttcgacctttactct
gatccgtctggtccggttcgcaagtttgctaccgagattattggtgaaattggagtgaag
caccttgaatttgtagctgaaattgcaccatttctgataactgttgtggaggatgctaca
cctgctgttgctcgacaatctattgcttgcagcattgatttgtttcgccatactctcgaa
aagattgcaattcggggtctttactccagtgaattggacagtgatcttgaatcatcgtgg
tcatggatgttaaagttgaaggagaagatatattctatagctttccagccaggaagtggt
gggataagattggtcgcactgaagtttgttgaagcggttattcttctttatactcctaac
cctaatggctctccggagccccctcctaatgaaggtacctctatagagtttaacataact
tggcttcgggggggccatcctttactcaatgttggggatttgtcaattgaagctagccaa
cgtttggttttgttgcttgatcagcttagatttcctgcggtaaaatctctcaccacctct
gtgattgttgtgattattaacagtctttcagcaattgcaaagaaaaggcctgcatattat
ggacgtattctaccagttttgctcagtttggatcccccaagctttgttatcaaaggggtt
catgtctatggagcacatcatgctttgaaaaatgccttactctcatgcttgaaatgcacg
cacccgagtgctgcaccgtggcgggaacgtatacttggtgccttgaaagagatgaaagct
ggaggactggcagatctagctctcaaccaagttcataaaattaatggaagtgtagaagag
gaaaaagatgattctttgcttattaaggaagaaaagcccttgactaaagcatatgatgct
gctggtagcaatgtggggaggaaaagatctggaaccgaggacagtagtgatttggctgaa
aaagatgaggtgtctggcaaacgtgtcaaggcaacacctagcgtctcagaagagtcaaca
aaagaattaaacacgaatataactgtgtctcaaggtgatatttcgtcaactcaatctagc
acaagaaaagtagatgttgataccggaccagtccagcaacttgttggcatgttcggtgcc
ttggttgctcaaggagaaaaagctgtgggatctttggggattcttatttcaaacatatct
gctgacttgctggctgaggtagtgatggctaacatgtgtaaccttcctcctacacatcct
cacactgacactgatgatgaattgctggaggatatgtgcatagttggaagtgacactcaa
gccaagtatccaccgtcatttttagctgatgtcatttcactatcaagtactttcccgccg
atagcctcaatgctgaactcccagcaatcagttcccaataaagtagtgatacagaaaaca
gaagaggaggaagaggttgatgttgtggctgaccctaatagtgctgttgcatatgctggg
atggctcgcgaagatgaaaatgctctcttggccactgatttacccgtttcgtctaacatt
gttttgcctggaatgaagattgatctacctactccatctgatatccatgatacaggcaat
cttgaaagtggcataccgggtttggattcttcttttcgtaatgatggactgtcagatact
caagctgcttcctcattagtctctactgatatagaagacgctagtcaagaacaagctaca
agttttggtggaaagtcaccgttgcatgtacttccatcaatttcaatagataggtctgag
gagcttagtccaaaagcggctgttactgattccagcagcatggtttcctcaacagcgact
tctgttgtttcatcctgtccttttgtcttgcccaagatgtcagcacctgttgtcaatctt
tccgaggatcagaaggatgatgtgcaaaagttggcttttgtacgaatcgttgaggcatat
aagcaaatagcagtagctggaggctcacaagttcgttcttctctgcttgcttacctgggg
gttgagttgccatcagagttagaactacagaaggttcttcgagaacacattttgtcagat
tatataaatcacgagggacatgagttgacattgcgtgtcctctataggttatttggaaag
gcagaagatgaaagtgatttcctctcatgtacaactgctgcttctgcatacgaaacattc
cttctggctgtcgctgaaactcttagggactcttttccgccttcagacaaatctttaagt
aaactacttggcgaggctcctcgcctgcctaagtcagttttgaatttattagggtgtctg
tgttcacctggaatttcagagaaagctgaggagtcacaaagtggagatagagttactcaa
ggcctcagcaccgtatggagcctaattctactgagacctcccattcgagatgtgtgcttg
aaaattgctttgcagagtgctgttcatcacttggaggaagtccgaatgaaagcgatacgc
ctggtagcaaataagctgtaccctttacaatctattgctcaacaaatagaaaaatttgca
agggaaatgctgctctctgtagtaaatgttgatgctacagaaagaacaggtgctgaagga
ttaatcagtgaatcacataaggactctgatttggaaaagtcatcaaatgagcatccgtca
atgagttcctgtagtaaagacatctctgctgatgttcatcagtcagaaacatctcatagt
gggtcatccccttctgtccctgaggctcagcggtgcatgtctctgtattttgctctttgt
acaaagaagcactctctttttggccgaatatttattatctacagtagtgcgtcgaaggaa
gttaagcaggcaatccatcgtcatattccaatactagtccgtactatgggcttgtcatct
gaccttcttgaaattatttcagatcctcctagtggaagtgagaatcttctgatgcaggtt
ttgcagacactgacagaagggacagttccttctgcagaattgatatttaccattaagaag
ttatttgattcaaaactgaaggatgttgaaattctagttccagtattgccattcctacaa
ggagatgaggttttgctgcttttcccccatcttgtaaatcttccgctggataagttccaa
gctgcgcttacccgtttgctacagggatctgctcactctggtccagtgctcactccagct
gaagtattaatcgctatccatggcattgatcctgaaagggatggaattcccttgaagaag
gtcactgatgcatgtaatgcttgttttgagcaacggcatatattcactcagcaggttctt
gcgaaggtcttaaatcagttggttgagcagattcctcttcctttgttgtttatgcgtacc
gtattacaagccattggtgcttttcctgcactggtggaattcataatggagattctttct
cgtcttgtaagcaagcaaatatggaaatacccaaagttgtgggtaggatttttgaaatgt
gcgctcttgacaaagcctcaatctttcagtgtgctgcttcagctacctcctccacaactt
gaaaatgcactgaacaggactgcagcactcaaagctcctttggttgctcatgctagccaa
cagaatatccgaaattcacttcctaggtctgtgttggcagttttgggacttgccccggat
actcagtcctccagtcaggcacaaacaagtcaggctcacaccggagatacaagcaactcc
gagaaggatgctgcagtgacagagaaatcgaaagagtcatccagtgctagctga
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integrated database retrieval system
