Gossypium arboreum (tree cotton): 108467800
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Entry
108467800 CDS
T05776
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04120
Ubiquitin mediated proteolysis
gab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108467800
04120 Ubiquitin mediated proteolysis
108467800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108467800
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108467800
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108467800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
108467800
NCBI-ProteinID:
XP_017624070
UniProt:
A0A0B0MU44
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Position
8:complement(141333634..141338971)
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AA seq
539 aa
AA seq
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MMRLQTYAGLSLVAMLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQI
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLGFLLLLDCLFLSSSIKFLIETRQASVSLFFAFEYM
ILATTIVSTFIKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLAIFMNYG
VPLHLIRELYETFRNFKIRVADYMRYRKIASNMNDRFPDATPEELAANDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSSSGGQHGPWSDAQGQGSGT
GSARQGSDGDMAADNLTQHQARLQAAATAASIYEKSYVYPSANTLVWSPGYAVLPKAYWQ
PDDSTKGESSGETTSTGEQFVIPGGQFNLSFPRFPHCAFVPFQLPRVTGNMGEASSSNLH
IPDSQLEAQKKIIQQQIEVLQNQLQLLQMQKPKTEESVDTGPTASSDRKGKTISSSSGD
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacctatgctggtctcagtttagtcgcgatgctagctgttatttac
catgcattcaacagtagaggccagttttatcctgctatggtgtatttatcaacctctaag
atcagcttggtgctgcttctcaacatggggcttgtatttatgtgcatcttatggcaaata
accaaaaagatattcctcgggtcccttcgtgaagctgaggttgaacggttgaatgagcag
tcgtggagagaggttatggagatcctctttgcgatcactattttccgtcaggacttctcg
gttacgtttcttgctatggttactgctctgttgttaatcaaggctttgcattggttggca
cagaaaagggttgagtacattgagacgaccccttctgttcctatgttgtctcacattcgg
attgtttcttttctgggtttccttcttcttctagattgtctgtttttgtcaagttctatc
aagtttctgatcgaaacacggcaagcttcagtttccctattctttgcgtttgagtacatg
attctggctacgacaatagtgtcaacttttataaaatatgttttctatgtgagtgacatg
cttatggaaggacaatgggagaagaaggctgtctataccttctacttggagctcattcgg
gacttgcttcacttgtctatgtatttatgcttctttcttgcgattttcatgaactatggt
gtacctctgcacttaatacgggagctatatgaaacctttaggaatttcaaaattcgtgtt
gctgattacatgcgttataggaagatcgcttcaaatatgaatgacagattcccagatgca
acccctgaagagctcgctgcaaatgatgcaacatgtattatatgccgtgaagagatgacc
acagcaaagaagttgatatgtggacatctttttcatgtgcactgtcttcgatcatggctg
gagagacagcatacctgccctacatgtagagctctcgttgtaccacctgaaaacggaaca
agttcatctggagggcaacatggaccttggtcagatgctcaaggacaagggtctggcaca
ggctcggctcgacaaggttctgatggtgacatggctgctgataatttgacccagcatcag
gccaggcttcaggctgctgccactgcagcatcaatatatgagaaatcctatgtctatcca
tctgcaaacactctagtttggtctcctggatatgctgtacttcccaaggcttattggcaa
ccggatgactccacgaagggcgaatctagtggggagaccacatccaccggagaacaattt
gtcattcctggtggacaattcaacttgtcctttccacggttcccacattgtgcttttgtt
cctttccaattgcctcgtgttactggaaacatgggagaggcatcgagtagtaatctgcac
attccagattctcagttggaagctcagaagaagatcattcagcaacagattgaggtgcta
caaaatcagctccaactcctgcagatgcagaagccgaaaactgaagaaagtgtggacact
ggtcccacagcctcgtcggacagaaaagggaagacaatttcttcttcttcaggagattga
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