Gossypium arboreum (tree cotton): 108467958
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Entry
108467958 CDS
T05776
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108467958
09123 Folding, sorting and degradation
03018 RNA degradation
108467958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108467958
03041 Spliceosome [BR:
gab03041
]
108467958
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108467958
mRNA degradation factors
5'-3' decay
Lsm complex
108467958
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108467958
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
108467958
NCBI-ProteinID:
XP_017624277
LinkDB
All DBs
Position
8:136091713..136094662
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRAREDGPGGRQPKGAGRGLDD
SARTTSGGRGRGGSGGKNTGGRGSGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctctactaaaaacggcacagggtcatcctatgttggtggaactgaaa
aatggggagacatataatggacatttggtcaattgcgacacttggatgaacatccatctt
cgtgaagttatctgtacttcaaaggatggagacaggttttggagaatgcctgaatgctat
atccgtggaaatacaatcaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaacaaagagtcgtgcagataggaagcctcctggtgtaggccgtgggagaggcagg
gctcgagaagatggtcctggtggaaggcaaccaaaaggagctgggcgtgggctagatgac
agtgctaggactacaagtggaggccgagggaggggtggttcaggtggaaaaaacactgga
ggcagaggtagtggccggggtcggggttga
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