KEGG   Gossypium arboreum (tree cotton): 108467958
Entry
108467958         CDS       T05776                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108467958
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108467958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108467958
   03041 Spliceosome [BR:gab03041]
    108467958
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108467958
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108467958
Spliceosome [BR:gab03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108467958
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 108467958
NCBI-ProteinID: XP_017624277
LinkDB
Position
8:136091713..136094662
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRAREDGPGGRQPKGAGRGLDD
SARTTSGGRGRGGSGGKNTGGRGSGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcctctttctctactaaaaacggcacagggtcatcctatgttggtggaactgaaa
aatggggagacatataatggacatttggtcaattgcgacacttggatgaacatccatctt
cgtgaagttatctgtacttcaaaggatggagacaggttttggagaatgcctgaatgctat
atccgtggaaatacaatcaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaacaaagagtcgtgcagataggaagcctcctggtgtaggccgtgggagaggcagg
gctcgagaagatggtcctggtggaaggcaaccaaaaggagctgggcgtgggctagatgac
agtgctaggactacaagtggaggccgagggaggggtggttcaggtggaaaaaacactgga
ggcagaggtagtggccggggtcggggttga

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