Gossypium arboreum (tree cotton): 108468042
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Entry
108468042 CDS
T05776
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108468042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108468042
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
108468042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
PilO
Dark_CARD
P116
HIM1
Motif
Other DBs
NCBI-GeneID:
108468042
NCBI-ProteinID:
XP_052879808
LinkDB
All DBs
Position
13:complement(96185165..96189358)
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AA seq
968 aa
AA seq
DB search
MLNPSLPVASRTRSRMEAYWSEVCPPSKRRNTRKKVVVQDPSPIPTKNHSGETQFLYEAP
NIDIHRCEQDSRHPANISNLDYNEEEDDDDDEDEDNDDPMEGSHEALPSPSEEDNYESED
LDYCGEEEEKDVVYINDYTSSGTESNPKSKGKKVGAALTSSRKLHLLTVEADAILENVDS
DSNKVLEVESENNSLPIKFGSWVENTVTPNNADIVDDEMESLWTEMQFCLASDGIASKPS
LVEIEDAANVSEVKQDRAVLCRQGDHYLVLDEEIGIKCKFCSFLQLEIKYVASPFMKHPY
GKFGRQYSGIVDSSMFDGLQDVDPNIDMPGCDSSANVEGTVWEIIPNIKEKLYPHQREGF
EFIWNNIAGGIYRDKSKNSSSEGGGCIISHAPGTGKSLLTIVFLQTYLKENPSCRPVIVA
PCSMLLTWEAEFSKWKVDIPFHNMNSPDFCGMGKTNGVALYEKLKVGVPDADRLVRPLVK
LLSWKYDGGILVISYNLFTQLAGKETKRKQKCKNLHKQISKILLDLPGLLILDEGHIPRN
AATLLWKALSGIKTNRRIILSGTPFQNNFDELFNTLCLVRPTFAEGIRYSTRYKHNSRLG
CKGNEAKRNFTSWIGSIRNEIGGLREVRAVIKPFVHVYKGTILQTALPGLRHTLVVLRPT
ELQKKILERVEEILKHVQEILECVKEAKNLFKRKREKEKKNALDFDRYVSMISIHPSLLK
QLLKQLPDLKDINEVVSSIVSTEEIERIRLKPEEGVKTRFLMNLLKLSEALEERVIVFSQ
YLGPLRLIMEQLEYYFKWKEGEEILFMHGKCDIKQRQCSINVFNDPESKARVLLASIKAC
SEGINLIGGSRVVLLDMTWNPSVERQAICRAYRLGQKKVVYVYRLISSVIEGHKFNRQAG
KDRVSELLFSSDEHQEQVCDIVEDKVLEEMLQHGTIKSMFEKIINEPKDCEFIEAFEDQE
KIMERGKD
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgttgaatccctccttgccggtggcttcaagaacccgaagtaggatggaagcctactgg
tccgaggtctgtcctccaagcaagcggaggaacaccaggaagaaggtggtggtgcaggac
cccagccccatacctactaagaatcactccggtgaaacccaattcttgtacgaagcacct
aacattgacatacaccgctgtgaacaagattccagacaccctgctaatatttccaatctt
gattataatgaagaagaagatgatgatgatgacgaagacgaagacaatgatgatccaatg
gagggttctcatgaggctctcccctctccaagcgaagaagacaattatgaatccgaggat
ttggattactgtggggaagaagaggagaaggacgtcgtttatatcaacgattatacatct
tccggtaccgagtctaatcctaagtctaagggtaaaaaagtgggggcggccttgacctcc
tccaggaaactccaccttcttacggtagaggcggatgctattttggagaatgtagactcg
gattcaaataaggtcctcgaagttgaatctgagaacaactctttgcctatcaagttcggt
tcttgggttgagaacacagttactcctaacaatgcagatattgttgatgatgaaatggag
tcactgtggactgagatgcagttttgtcttgcgtctgatgggattgcttcaaagccttcc
ttggtggaaattgaggatgccgctaatgtttctgaggttaaacaggacagagcagtccta
tgtcgtcaaggggatcattatcttgtgctagatgaagaaattggaataaaatgcaaattt
tgctcctttctgcaactggaaatcaaatacgttgcttcaccttttatgaaacatccttat
ggaaaatttgggaggcaatactctggcattgtggactcctctatgtttgatggtcttcaa
gatgtagaccctaacattgatatgcctggttgtgattcctctgccaatgtcgaaggaaca
gtatgggaaatcattccaaacataaaggaaaaactttacccccatcagcgtgaaggtttt
gaattcatttggaataatatagcagggggaatatatcgtgataagtctaaaaactcgtcc
agtgaaggtggaggatgcattatatcacatgctccagggacagggaagagtctactgact
attgtctttcttcagacatacttaaaagagaatccaagttgcaggccggtgattgttgct
ccatgtagtatgttactgacatgggaagcagagttcagtaagtggaaggttgatattccc
tttcacaatatgaacagtccggatttttgtggaatgggaaaaacaaatggagttgctctt
tatgagaaacttaaagttggtgtcccggatgcagatagacttgttaggcctttggtgaaa
ctgctttcctggaaatacgatggaggcattttggtgatcagttacaaccttttcactcaa
cttgctggaaaagagacaaagaggaaacaaaaatgtaaaaatctacataagcaaatcagc
aaaatccttctcgaccttcccggccttctaatccttgatgaaggacacataccaagaaat
gctgctactcttttgtggaaggctttgtctggaattaaaaccaatcgccgtatcattctt
tccggaactcctttccagaataattttgatgagctcttcaacacactctgcttagtgaga
cccacatttgctgaaggaatccggtattctactcgatacaagcataatagtaggcttggg
tgcaaaggaaacgaagcaaagcgaaactttacctcttggattggttccattagaaatgaa
atcgggggactgagggaggttagagctgtgattaagccttttgttcacgtgtataaaggc
acaattctacagactgcacttcccggtttgaggcacactctagttgtattacggcccact
gaactgcagaagaaaatcctggagcgcgttgaagaaatcctgaagcatgtacaagaaatc
ctggagtgtgttaaggaagcaaagaatctgttcaagagaaaaagagagaaagaaaaaaag
aatgcacttgattttgatcgttatgtgtccatgatctcaatccacccctcattgttgaag
cagctgttgaagcagcttccagacctgaaggatattaatgaagttgtaagctccattgtt
agcacggaagagatagaaaggataagactgaaacctgaggaaggagtgaaaacaagattc
ctcatgaatctgcttaagcttagtgaagctctggaggaaagggttatagtttttagtcaa
tatcttggacctttacggttaataatggagcagcttgagtattattttaaatggaaggaa
ggggaggagatattgttcatgcacgggaaatgtgatataaaacagcgtcagtgctccatt
aatgtgtttaatgatccagaaagcaaagcaagggtgttgcttgcatcaataaaggcttgc
tctgagggtataaatcttatcggaggttcaagggtggtgttgcttgatatgacgtggaac
ccatccgtggaaagacaagctatatgccgcgcatataggctaggccagaaaaaggttgta
tacgtttaccgacttatctcatccgtgattgaggggcacaaatttaatcgacaagctggc
aaggatcgggtatctgagttattgttctcttctgatgagcatcaggagcaagtctgtgat
attgtggaggataaagttttggaagagatgctgcagcatggaacaatcaagtcaatgttt
gaaaagatcattaatgagcccaaagattgtgagttcattgaagcttttgaggatcaagaa
aagattatggaaaggggaaaagattga
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