Gossypium arboreum (tree cotton): 108468642
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Entry
108468642 CDS
T05776
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108468642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108468642
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108468642
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108468642
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
108468642
NCBI-ProteinID:
XP_017625008
UniProt:
A0ABR0PBE0
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All DBs
Position
7:complement(84322524..84323755)
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AA seq
276 aa
AA seq
DB search
MGFLRSVKIREVWSDNLESEFELISRVIDDFPFVSMDTEFPGLVFRPKVDPTKPYHEQLL
RPSDHYKILKSNVDALNLIQVGLTLSDSSGNLPVLGTDDTQFIWQFNFCDFDVERDAHAP
DSIELLRRQGVDFEKNKENGIDSVRFAELTMSSGLVCNDSVSWVTFHSAYDFGYLVKILT
RRDLPEGLDEFLRILRVFFGNKVYDVKHMTRFCKSLYGGLDRLAQTLDVNRAVGKSHQAG
SDSLLTWHTFQKMRDVYFVNEGPEKHAGVLYGLEVL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggggtttttaagatctgtgaagataagggaagtttggtcggataatttagaatcagag
ttcgagctgatcagtcgggtaattgatgacttccctttcgtttccatggacactgaattt
ccaggtcttgttttcagaccaaaagtggaccccactaagccttaccatgaacaactcctc
cgaccctccgatcattacaagatcctcaaatctaacgttgatgctctcaacttgatccaa
gtgggccttactctctccgattcttcaggtaacctgccagttctcggaaccgacgacact
cagttcatttggcaattcaatttctgcgacttcgatgtggagcgtgacgctcacgcccct
gattccatcgagcttttgaggaggcaaggggttgattttgagaagaacaaggaaaacggg
atcgactcggttcgattcgctgagttgaccatgtcctctggactcgtatgcaatgactca
gtgagttgggtgaccttccacagcgcatatgatttcgggtacctggttaagatcctaacg
cgacgagacttgcccgagggcttggatgagtttttgagaattctgagggtgtttttcggg
aacaaagtttacgatgtgaagcacatgacgagattctgcaagagcttgtatggtgggttg
gaccggctggctcaaacgttagatgtgaaccgtgcggttgggaaatctcaccaagccggg
tctgattccttgctgacttggcacacgtttcagaaaatgagggacgtgtattttgtgaac
gagggaccggaaaagcatgctggtgtattgtatggattggaagtattataa
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